Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0032
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   4e-29
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.33 
SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   1.8  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      29   2.3  
SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)            28   5.4  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           28   5.4  
SB_53268| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)              27   7.1  
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)                     27   7.1  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  124 bits (299), Expect = 4e-29
 Identities = 57/76 (75%), Positives = 68/76 (89%)
 Frame = +1

Query: 34  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
           MK N +V+SSRRK+RK HFSAPS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RG
Sbjct: 1   MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60

Query: 214 HYKGQQVGKVMQVYVK 261
           H+K QQVGKV+QVY K
Sbjct: 61  HFKSQQVGKVIQVYRK 76



 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 40/58 (68%), Positives = 49/58 (84%)
 Frame = +3

Query: 255 RKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGK 428
           RKK+V++I+RIQREKANGAT  VGIHPSK  IVKLK++KDRK ILDR+ + +LA  GK
Sbjct: 75  RKKWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSKLAEKGK 132


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 34  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 186
           MK + Q+    RK+ K H   P HIR+    S + K +R+  N  + P  IRK
Sbjct: 1   MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 6   RGRFGEERQNEVQQAGDFLKK--EKQEEAFQCSFTYKASVDVLSPV*GTKTKIQ 161
           R + G E++    +A ++ KK  E  +  F C   Y  +V  +    GTKTKIQ
Sbjct: 159 RAKDGNEKKKFTYEALEYAKKSVELDDRDFACHKWYAITVSNVGDFEGTKTKIQ 212


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 305 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSHG 469
           W N IC     ++C C+V DE     N + ++    G TW R    +R   +  G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 479 LRGLHGCGSFLGVFTLVFAKCSQS 408
           L GLH CG  +     VFAKC Q+
Sbjct: 72  LVGLHPCGDLVPTMLKVFAKCDQA 95


>SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)
          Length = 606

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 40  FNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 192
           F+    S  +K+ +R+F   +HI + + +S  SK+ ++    K    + DD
Sbjct: 124 FSTSQASRPKKSNRRYFPTSNHIAKAISASRYSKDDQESLKRKVEEWQTDD 174


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -1

Query: 396 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWP--FLFESSQCIQQT 262
           C  G +  +   ST  +  L+G+ CR M+L HWP  F  +  + + +T
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWFSLDELESVDET 372


>SB_53268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +1

Query: 133 LSKELRQKFNVKSMP-IRKDDEVQVVRGHYKGQQVGK---VMQVYVKSLLYTLRGFKEKR 300
           +S+E   +F  K  P I K++  +     Y+  ++ +   V Q YV S+L TL  FK   
Sbjct: 181 MSEEKVVEFESKQKPEIFKEEAAEKQHKDYEILRIPRSREVKQTYVSSVLTTLYAFKATL 240

Query: 301 PMV 309
           P+V
Sbjct: 241 PLV 243


>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
          Length = 586

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 93  CSFTYKASVDVLSPV*GTKTKIQCKIHAYSQR 188
           CS   K  ++ L+ + GT  KI+ K HA+S++
Sbjct: 72  CSCKTKTELNALNELLGTDEKIEKKSHAWSEK 103


>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 437 TLVFAKCSQSALCSAIEDCFAVFI 366
           T+  + C + + CS I DCF VFI
Sbjct: 221 TMPLSFCQKFSSCSVIIDCFEVFI 244


>SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)
          Length = 160

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/69 (23%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = +1

Query: 1   RHEVVLAKSDRMKFN--KQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSM 174
           ++E ++A+S +++F   K+  S ++ + K+H ++  H+R     + L K+  +  N+K +
Sbjct: 35  QNEHLVAQSGKLRFEACKKTLSKKKSSLKKHVTSQKHLR---AKAFLEKDKTKDQNIKKL 91

Query: 175 PIRKDDEVQ 201
            + K   +Q
Sbjct: 92  -LSKHSTIQ 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,059,792
Number of Sequences: 59808
Number of extensions: 355018
Number of successful extensions: 1094
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)