Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0032
         (522 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)           120   4e-28
At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...   115   2e-26
At4g36240.1 68417.m05155 zinc finger (GATA type) family protein ...    29   1.9  
At1g28070.1 68414.m03436 expressed protein ; expression supporte...    28   3.3  
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    27   5.8  

>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score =  120 bits (290), Expect = 4e-28
 Identities = 58/74 (78%), Positives = 67/74 (90%)
 Frame = +1

Query: 34  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
           MKFN +V+SSRRKNRK HF+APS +RRVLMSSPLSK+LR K NV+SMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 214 HYKGQQVGKVMQVY 255
            +KG++ GKVMQVY
Sbjct: 61  TFKGRE-GKVMQVY 73



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 33/61 (54%), Positives = 49/61 (80%)
 Frame = +3

Query: 255 RKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDK 434
           R+K+V++IERI REK NG+T  VG++ S  +I KL+++KDRK++L+R+A GR AA  K+K
Sbjct: 74  RRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGR-AAADKEK 132

Query: 435 G 437
           G
Sbjct: 133 G 133


>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score =  115 bits (277), Expect = 2e-26
 Identities = 55/74 (74%), Positives = 66/74 (89%)
 Frame = +1

Query: 34  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
           MK+N +VTSSRRKNRK HF+A S  RRV+MSSPLS +LRQK+NV+SMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 214 HYKGQQVGKVMQVY 255
            YKG++ GKV+QVY
Sbjct: 61  TYKGRE-GKVVQVY 73



 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 38/61 (62%), Positives = 50/61 (81%)
 Frame = +3

Query: 255 RKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDK 434
           R+K+V++IERI REK NG T  VGI PSK VI KL+++KDRK++L+R+AKGR AA  K+K
Sbjct: 74  RRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGR-AAADKEK 132

Query: 435 G 437
           G
Sbjct: 133 G 133


>At4g36240.1 68417.m05155 zinc finger (GATA type) family protein
           NTL1 protein, curled-leaved tobacco, PIR2:S46419
          Length = 238

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +3

Query: 78  EEAFQCSFTYKASVDVLSPV*GTKTKIQC-KIHAYSQRR*SSGCTWTLQRPTGWQSDAGV 254
           E++F  S +Y +S   ++PV   + + QC  +   S+RR ++G  W+++ P+   S A  
Sbjct: 82  EDSF--SESYISSDFPVNPVASVEVRRQCVPVKPRSKRRRTNGRIWSMESPSPLLSTAVA 139

Query: 255 RKK 263
           R+K
Sbjct: 140 RRK 142


>At1g28070.1 68414.m03436 expressed protein ; expression supported
           by MPSS
          Length = 176

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 58  SSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVG 237
           S R      HFS PSH+ + L     + E+  +     M +++D    + RG+Y  Q  G
Sbjct: 38  SDRFLELSSHFSVPSHLEQCL--DLKTGEIYYRSWNSGMRVKEDPRKSMSRGNYADQSSG 95

Query: 238 K 240
           +
Sbjct: 96  E 96


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor [Homo
            sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1706

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 59   PQEGKTGRGISVLLHI 106
            P +G TG GISVLLH+
Sbjct: 1408 PFQGSTGSGISVLLHL 1423


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,024,992
Number of Sequences: 28952
Number of extensions: 237382
Number of successful extensions: 682
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)