Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0031
(390 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 33 0.054
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 31 0.38
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 31 0.38
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 28 2.0
AF026203-1|AAB71246.2| 506|Caenorhabditis elegans Hypothetical ... 27 4.7
Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical pr... 26 8.2
U37430-2|AAL08045.2| 802|Caenorhabditis elegans Hypothetical pr... 26 8.2
AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 26 8.2
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 33.5 bits (73), Expect = 0.054
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = +3
Query: 60 SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGRQHCV 233
+C SG +G RC C HWGS + G+ R +GN C + + H
Sbjct: 973 NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGNIDMAMEGSCDAATGECLKCLHHT 1032
Query: 234 TVDCCCHVAPTP*GDAK 284
C H GDAK
Sbjct: 1033 EGAQCEHCVDGYYGDAK 1049
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 30.7 bits (66), Expect = 0.38
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +3
Query: 45 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 215
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 216 GRQHCVTVDCCC 251
GR HC + C C
Sbjct: 1250 GR-HC-SQSCRC 1259
Score = 27.9 bits (59), Expect = 2.7
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +3
Query: 42 KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 221
KE+G CI G G C + +G R + + RK RC L +SG
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194
Query: 222 QHC 230
+HC
Sbjct: 1195 EHC 1197
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 30.7 bits (66), Expect = 0.38
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +3
Query: 45 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 215
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 216 GRQHCVTVDCCC 251
GR HC + C C
Sbjct: 1250 GR-HC-SQSCRC 1259
Score = 27.9 bits (59), Expect = 2.7
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +3
Query: 42 KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 221
KE+G CI G G C + +G R + + RK RC L +SG
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194
Query: 222 QHC 230
+HC
Sbjct: 1195 EHC 1197
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 264 WGLHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 106
+ H +S QL GH +V CLCSS +S S + +SQ TP+
Sbjct: 894 YAYHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946
>AF026203-1|AAB71246.2| 506|Caenorhabditis elegans Hypothetical
protein E03E2.1 protein.
Length = 506
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 322 KVRSWSDVENG*CLASPHGVGATWQQQSTVTQCCRPLNFRSMLVQQRLCFLP 167
K+ + +EN + +P G + C RP F ++ QQR F+P
Sbjct: 387 KIGKYQFLENVQIVVNPWGPHHDREIWGNDVDCFRPSRFENLTEQQRKAFMP 438
>Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical
protein F44D12.2 protein.
Length = 342
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 109 QCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRR 11
+CH+ + PRLP ++ + C FC + A R
Sbjct: 214 ECHV-DYFNPRLPYVKSGSSCIGQFCFISATSR 245
>U37430-2|AAL08045.2| 802|Caenorhabditis elegans Hypothetical
protein K09F5.6 protein.
Length = 802
Score = 26.2 bits (55), Expect = 8.2
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -3
Query: 340 IPNKTEKVRSWSDVENG*CLASPHGVGATWQQQSTVTQCCRPLNFRSMLVQQRLCFLPLF 161
+ ++ E+V S +NG HG WQ + Q + + L+ Q+L F LF
Sbjct: 89 LADREERVLEVSRNQNGEKSGCVHGAKVLWQHLPPLPQQLHVIIAVAQLIAQQLMFSQLF 148
>AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein
2 protein.
Length = 203
Score = 26.2 bits (55), Expect = 8.2
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = -3
Query: 130 LMESTDPQCHILQHRRPRLPLMQLEAPCSF 41
L+E DP C ++ +++P++ +E +F
Sbjct: 68 LIEKLDPSCRVVYNKKPKMAFPMMENISNF 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,363,546
Number of Sequences: 27780
Number of extensions: 151338
Number of successful extensions: 319
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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