Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0030
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   2.4  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   3.1  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   5.5  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    25   7.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   9.6  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    24   9.6  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 422 YCLDG*RAHSPPGVKWLLEPIDIYN 348
           Y  DG   H P  V WLL P DIY+
Sbjct: 231 YGTDGGPLHDPNTVMWLLRP-DIYS 254


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
 Frame = -3

Query: 448 RKRLFYFYFIA*MDDELTAHLVLSGYWSP*TFTT*MRHAPRDISS----KISV*LQRLPH 281
           R+    F+F    ++  T + V SG+W+        +H+ RD       K+     +LP 
Sbjct: 230 REEFRKFFFELGFEEMPTNNFVESGFWNFDALFVPQQHSARDAQDTFFLKVPASTDKLPD 289

Query: 280 PSNRNALVLTAEIGGGWWYLPVRTP 206
           P     +  T E GG    +  R P
Sbjct: 290 PEYVARVKATHENGGETKGIGYRAP 314


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 83   EKLVPACGIRTPVHLYAY 30
            EK+VP CG    +HL+ Y
Sbjct: 1057 EKIVPKCGKNCYLHLHGY 1074


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 216 TGRYHHPPPISAVSTNAFRFEGWGSRCN--YTEILELIS 326
           T + H PPPI+  +  ++R EG   R N  + +++E ++
Sbjct: 141 TVKKHAPPPIAMTNAISWRSEGIHYRKNEVFLDVIESVN 179


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 46   TGVRIPQAGTNFSNEIRTQQMF 111
            T   IP+A  +F+N+I TQ  F
Sbjct: 1302 TSSDIPKANIDFTNDISTQNTF 1323


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 48  GASICIQMHRKSYLVP 1
           G SIC+ M+RK+ L P
Sbjct: 109 GYSICMDMYRKNVLAP 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,896
Number of Sequences: 5004
Number of extensions: 39789
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)