Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0030
(456 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250... 30 1.0
07_03_0664 + 20462600-20463005,20464270-20464343 28 3.1
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490... 28 3.1
01_06_1749 - 39636951-39638102 28 3.1
04_01_0501 - 6558120-6559312,6559441-6559518,6559818-6559877,656... 27 5.4
02_01_0743 - 5530184-5531078,5531160-5531405,5531815-5532450,553... 27 7.2
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 27 7.2
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057... 27 9.5
>08_01_0304 -
2502760-2502774,2502844-2502921,2503035-2503103,
2503200-2503289,2503400-2503517,2505548-2505678,
2505756-2506025,2507175-2507308,2507635-2508088
Length = 452
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +1
Query: 40 RCTGVRIPQAGTNFSNEIRTQQMFTIDFHGE 132
RCTGV I G N +I T DFHGE
Sbjct: 159 RCTGVVIGWDGANKRAKILTAASVVCDFHGE 189
>07_03_0664 + 20462600-20463005,20464270-20464343
Length = 159
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 103 QMFTIDFHGEGITSCNXNQTSKIIICVITGGRTSWESARV 222
Q + + H SC N TS++I + R SW S +
Sbjct: 47 QCYCFETHRRWRCSCYENTTSRLISMLAAAARPSWRSGSI 86
>07_01_0654 -
4900509-4900518,4900626-4900709,4900844-4901377,
4901462-4901619,4901703-4901832,4901918-4901999,
4902097-4902230,4902314-4902410,4902512-4902788,
4902881-4903024
Length = 549
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 67 AGTNFSNEIRTQQMFTIDFHGEGITSC-NXNQTSKIIICVITGGRTSWESARVGTTTPRL 243
+GT+ + ++ +D G GIT+C N+ K ++ G + RV T +L
Sbjct: 29 SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88
>01_06_1749 - 39636951-39638102
Length = 383
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 305 SIVTTATPPFEPKRISAHSGNRRG 234
S+ + A PPF+P RI++++ + G
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNG 188
>04_01_0501 -
6558120-6559312,6559441-6559518,6559818-6559877,
6560000-6560083,6560407-6560566
Length = 524
Score = 27.5 bits (58), Expect = 5.4
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Frame = +1
Query: 1 RHEIRLPMHLYAYRCTGVRIPQAG-------TNFSNEIRTQQMFTIDFHGEGITSCNXNQ 159
R + LP A R G + AG F+ E+ + + + HG G+T+C
Sbjct: 367 RKLMNLPEVAAAARAAGFEVTVAGGRPTSTYDEFAREVNSYDVM-VGVHGAGLTNCVFLP 425
Query: 160 TSKIIICVITGGR 198
T +++ ++ GR
Sbjct: 426 TGAVLLQIVPYGR 438
>02_01_0743 -
5530184-5531078,5531160-5531405,5531815-5532450,
5534499-5534607,5536157-5536321,5536446-5536543,
5536648-5536898
Length = 799
Score = 27.1 bits (57), Expect = 7.2
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Frame = -1
Query: 240 AGGGGTYPCGLPRSPTTSDYANYNFAGLIXITRCYSF--TVE-VNREHLLSTYFIRKIGT 70
AGGGG P P SP NY ++ +T + TV+ V + + Y G
Sbjct: 677 AGGGGAAPFRCPASPPKVQDLNYPSITVVNLTSSATVRRTVKNVGKPGVYKAYVTSPAGV 736
Query: 69 RLRDSNTGASICIQMHRKSYLV 4
R+ S ++ +K++ V
Sbjct: 737 RVTVSPDTLPFLLKGEKKTFQV 758
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 27.1 bits (57), Expect = 7.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 225 YHHPPPISAVSTNAFRFEGWGSRCNYTEILELISRGAWR--IYVVNVYGLQ 371
+H P P +A +T A F+ W +R NY L RG R + YG Q
Sbjct: 1000 HHLPQPGAAGATEAVCFQMWTARVNY----RLSKRGKRRDLFWTFEAYGRQ 1046
>02_05_0278 +
27404914-27404947,27405088-27405228,27405747-27405772,
27406036-27406071,27406296-27406976
Length = 305
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 296 TTATPPFEPKRISAHSGNRRGVVVPTRADSQE 201
TT+TP P+ SA + +RR P R + E
Sbjct: 243 TTSTPRSAPRCASARAASRRSSAAPARRRASE 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,780,011
Number of Sequences: 37544
Number of extensions: 294300
Number of successful extensions: 670
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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