Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0029
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.3  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   4.0  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   5.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = -3

Query: 291  GLCPGLKC*CCFL*KNILQLI*HGHQWVDKGS----LSIQRRP 175
            G  PG+     FL  N   L+   H W D G      +IQ RP
Sbjct: 1496 GQAPGIPPAATFLSPNSTTLVLRLHVWPDNGCPILYFTIQYRP 1538


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = -3

Query: 291  GLCPGLKC*CCFL*KNILQLI*HGHQWVDKGS----LSIQRRP 175
            G  PG+     FL  N   L+   H W D G      +IQ RP
Sbjct: 1492 GQAPGIPPAATFLSPNSTTLVLRLHVWPDNGCPILYFTIQYRP 1534


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 152 F*SRTESGGLRWMLNDPLSTHWW 220
           F  R  +G  +W++N+     WW
Sbjct: 24  FLKRPITGDEKWVVNNIKRKRWW 46


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 176 HHSLCVTKNCCN 141
           HH + + KN CN
Sbjct: 24  HHKILIKKNKCN 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,156
Number of Sequences: 438
Number of extensions: 1843
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)