Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0028
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719... 127 3e-30
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 59 1e-09
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590 57 6e-09
04_04_0303 + 24269467-24270741 31 0.25
02_05_0029 - 25194827-25195095,25195129-25197970 29 1.8
01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205... 28 3.1
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668... 27 5.5
12_01_0045 - 354825-355504,355602-355776,355847-355927,357266-35... 27 7.2
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 27 7.2
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345... 27 7.2
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 27 7.2
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306... 27 7.2
06_01_0462 - 3285667-3288123 26 9.5
>04_03_0487 +
16471538-16471540,16471694-16471795,16471880-16471908,
16472619-16472745
Length = 86
Score = 127 bits (307), Expect = 3e-30
Identities = 55/79 (69%), Positives = 63/79 (79%)
Frame = +3
Query: 30 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 209
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66
Query: 210 QPTGGRARLTEGCSFEENN 266
QPTGG+ARLTEGCSF +
Sbjct: 67 QPTGGKARLTEGCSFRRKS 85
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 58.8 bits (136), Expect = 1e-09
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +3
Query: 30 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 167
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ ++ F A
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52
>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
Length = 45
Score = 56.8 bits (131), Expect = 6e-09
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +3
Query: 30 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 146
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ +
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45
>04_04_0303 + 24269467-24270741
Length = 424
Score = 31.5 bits (68), Expect = 0.25
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +3
Query: 27 AIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 206
A+ LLHP L ++PH S +D CP Y+I ++ RVV C+++
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197
Query: 207 CQPTGGRA 230
C TG A
Sbjct: 198 CSATGAGA 205
>02_05_0029 - 25194827-25195095,25195129-25197970
Length = 1036
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 204 LCQPTGGRARLTEGCSFEENNINI*VLDRALFNFKIFFPIV*WSDI 341
+C+P G R ++ +E N VLDRA+++ K +V DI
Sbjct: 958 MCKPKGARELVSWVLHMKEKNCEAEVLDRAMYDKKFEMQMVQMIDI 1003
>01_05_0607 +
23619271-23619426,23619479-23619552,23619917-23620594,
23620711-23620815,23620877-23621003,23621613-23621773,
23621858-23622028,23622195-23622324,23622532-23622747,
23626821-23627348
Length = 781
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -3
Query: 161 TKNCCNLVTARALNIHEIRVRMWH*PLKLMFPPLRRRGRMQQINCERHGYSCR 3
T +CC + A L+ E RV + PL+++ L RG + Q+N G S R
Sbjct: 679 TAHCCFICRAGVLSAGECRVAVGVDPLEVL-DRLPDRGAVHQMNRREAGNSTR 730
>03_02_0238 -
6687334-6687421,6687456-6687512,6688266-6688351,
6688410-6688589
Length = 136
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 135 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 227
CYKI+ ++SH Q ++ C IL +PTG R
Sbjct: 96 CYKISKIYSHGQSLL----CLDIL-RPTGRR 121
>12_01_0045 -
354825-355504,355602-355776,355847-355927,357266-357498,
357921-358104
Length = 450
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 369 RWIHCSELEKYHSI 328
RWIH SELE+ H+I
Sbjct: 416 RWIHHSELEEVHTI 429
>09_04_0594 - 18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 4 RHE*PCRSQLICCILPLRRRGGNISLSG*CHILTLISWMLSALAVTRLQQFL 159
R + P R ++ ++ RRRGG + +L I W S + +L + L
Sbjct: 1076 RSQQPAREEVSSTLINTRRRGGGLIFISLMVLLVAIMWTFSNGSAVKLSKGL 1127
>08_01_0392 -
3454224-3454325,3454926-3455035,3455496-3455609,
3455930-3456043,3456474-3456531
Length = 165
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 99 PNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 224
PN + C GC + ++ V CA CST+ P G
Sbjct: 18 PNGAQSQLVCSGCRNLL-MYPAGATSVCCAVCSTVTAVPAPG 58
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 165 AQRVVVCAGCSTILCQPTGGRARLTEGCS 251
AQ +VC+GC +L P G + CS
Sbjct: 21 AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 12 VTMPLAIDLLHPSPASERRKHK 77
+T P DL + +PA++RR+HK
Sbjct: 98 LTQPFPADLPNNAPAAQRREHK 119
>02_01_0418 -
3059575-3061279,3061915-3061973,3064270-3064353,
3064395-3064559
Length = 670
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +3
Query: 3 SARVTMPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSH 164
S V L L+ + ASERRK K+ L N + + YK V SH
Sbjct: 49 SLAVPRSLEAKLMVKTLASERRKRKVNNLERKGNKVDVSIAANDYYKPRAVKSH 102
>06_01_0462 - 3285667-3288123
Length = 818
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 282 LDRALFNFKIFFPIV*WSDIFQV 350
LDR LF++ FP++ WS + +
Sbjct: 614 LDRLLFDYHNLFPVLKWSQRYNI 636
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,048,030
Number of Sequences: 37544
Number of extensions: 203880
Number of successful extensions: 474
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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