Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0028
         (400 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    23   4.1  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    23   4.1  
EF426176-1|ABO26419.1|  155|Anopheles gambiae unknown protein.         23   5.4  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    22   9.5  
DQ080821-1|AAY89467.1|  170|Anopheles gambiae transcription fact...    22   9.5  
DQ080820-1|AAY89466.1|  170|Anopheles gambiae transcription fact...    22   9.5  

>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 308 DFFSNCIME*YFSSSLQWIH 367
           D+ +NC+   YFS     +H
Sbjct: 454 DYMNNCLQSGYFSGGFSSLH 473


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 307  RFFFQLYNGVIFFKF 351
            +F FQ++NG  FF F
Sbjct: 1035 QFMFQIFNGERFFAF 1049


>EF426176-1|ABO26419.1|  155|Anopheles gambiae unknown protein.
          Length = 155

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 135 CYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLT 239
           C  I +      R+V C  C+T LC    G   +T
Sbjct: 106 CSLIQSALPSEIRIVDCDLCTTELCNGASGITAVT 140


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 206 LSTHWWPC*IN*RMFF*RKQH*HLSPGQSPI 298
           L+   WP  I  R FF  +QH H +   SPI
Sbjct: 271 LTPSTWPVGIGVREFFQSRQHDHQT--SSPI 299


>DQ080821-1|AAY89467.1|  170|Anopheles gambiae transcription factor
           3C protein.
          Length = 170

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 334 VIFFKFTTMDPSEHYK*RLF 393
           V+ ++F TMD  ++Y  RLF
Sbjct: 143 VLRYRFETMDDLQNYWDRLF 162


>DQ080820-1|AAY89466.1|  170|Anopheles gambiae transcription factor
           3C protein.
          Length = 170

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 334 VIFFKFTTMDPSEHYK*RLF 393
           V+ ++F TMD  ++Y  RLF
Sbjct: 143 VLRYRFETMDDLQNYWDRLF 162


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,211
Number of Sequences: 2352
Number of extensions: 7755
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31639662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)