Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0028
         (400 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)           134   2e-32
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden...   129   6e-31
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)           125   9e-30
At2g44870.1 68415.m05586 expressed protein                             30   0.49 
At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putativ...    27   4.6  
At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia l...    27   4.6  
At3g56410.2 68416.m06274 expressed protein                             27   6.1  
At3g56410.1 68416.m06273 expressed protein                             27   6.1  
At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transfera...    26   8.0  

>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
          Length = 84

 Score =  134 bits (324), Expect = 2e-32
 Identities = 57/77 (74%), Positives = 64/77 (83%)
 Frame = +3

Query: 30  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 209
           IDLLHP P  E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C T+LC
Sbjct: 7   IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66

Query: 210 QPTGGRARLTEGCSFEE 260
           QPTGG+ARL EGCSF +
Sbjct: 67  QPTGGKARLQEGCSFRK 83


>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
           identical to cDNA ribosomal protein S27 (ARS27A)
           GI:4193381
          Length = 86

 Score =  129 bits (312), Expect = 6e-31
 Identities = 56/75 (74%), Positives = 63/75 (84%)
 Frame = +3

Query: 30  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 209
           IDLL+P    E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C TILC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66

Query: 210 QPTGGRARLTEGCSF 254
           QPTGG+A+LTEGCSF
Sbjct: 67  QPTGGKAKLTEGCSF 81


>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
          Length = 84

 Score =  125 bits (302), Expect = 9e-30
 Identities = 53/77 (68%), Positives = 63/77 (81%)
 Frame = +3

Query: 30  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 209
           IDLL+P    E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VV+C  C T+LC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66

Query: 210 QPTGGRARLTEGCSFEE 260
            PTGG+A+LTEGCSF +
Sbjct: 67  TPTGGKAKLTEGCSFRK 83


>At2g44870.1 68415.m05586 expressed protein
          Length = 248

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 102 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTG 221
           N++ +  +CP C +      +  +++ C GC  I+ QP G
Sbjct: 175 NNFVIKGECPACKR--QFIGYKNQIIRCEGCGNIVWQPQG 212


>At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putative
           similar to UV-damaged DNA binding protein (GI:12082087)
           [Oryza sativa] and damage-specific DNA binding protein
           1, Homo sapiens, PIR2:I38908; contains Pfam PF03178 :
           CPSF A subunit region
          Length = 1088

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
 Frame = +3

Query: 15  TMPLAIDLLHPSPASERRKHKLKRLVPHPN-----SYFMDVKCPGCYKITTVFSHAQRVV 179
           T   AI  L   P++E  +    RL+   +     SY +D    GC  ++  F+  + V 
Sbjct: 724 TRTFAISCLRNEPSAEESESHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSFTDDKNVY 783

Query: 180 VCAGCSTIL---CQPTGGR 227
            C G + +L    +PT GR
Sbjct: 784 YCVGTAYVLPEENEPTKGR 802


>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 556

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 149 CNLVTARALNIHEIRVRMWH*PLKL 75
           C++  A  LNIH++   +WH PL L
Sbjct: 234 CHVAAANILNIHDV-PNIWHVPLLL 257


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 84  RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 206
           R VP  +S    V+CP C+K+      A     C GC +IL
Sbjct: 55  RTVPGLSSQSRIVRCPKCHKLLQEPLDATS-YKCGGCDSIL 94


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 84  RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 206
           R VP  +S    V+CP C+K+      A     C GC +IL
Sbjct: 8   RTVPGLSSQSRIVRCPKCHKLLQEPLDATS-YKCGGCDSIL 47


>At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 78  LKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 209
           ++ + P P+    D+  P   KI   FS  + V    GC  +LC
Sbjct: 117 MEEMKPRPSCIISDLLLPYTSKIARKFSIPKIVFHGTGCFNLLC 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,733,267
Number of Sequences: 28952
Number of extensions: 159804
Number of successful extensions: 380
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)