Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0027
         (787 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.6  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   6.4  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   6.4  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   8.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 423 LYLLEFCPAVCF*LLDLLHSIRARYAVFLALCDRHLHQNF 542
           ++LL +CP + F +  LL +    YA  + LC  + +  F
Sbjct: 81  VHLLFYCPFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAF 120


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 679 EQRKTDQKTVDEAVIKAIGARPDKK 753
           ++ K D+K  D   ++A+  RP  K
Sbjct: 112 DENKLDKKNDDSPALRALLTRPQAK 136


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 679 EQRKTDQKTVDEAVIKAIGARPDKK 753
           ++ K D+K  D   ++A+  RP  K
Sbjct: 112 DENKLDKKNDDSPALRALLTRPQAK 136


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 679 EQRKTDQKTVDEAVIKAIGARPDKK 753
           ++ K D+K  D   ++A+  RP  K
Sbjct: 112 DENKLDKKDDDSPALRALLTRPQAK 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,348
Number of Sequences: 336
Number of extensions: 4142
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)