Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0027
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 66 4e-11
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 64 1e-10
05_07_0258 - 28729620-28729782,28730193-28730339,28730808-287310... 30 2.4
02_02_0470 - 10700092-10700505 30 2.4
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 29 3.2
10_08_0951 - 21769342-21769752 29 5.5
11_06_0284 + 21909758-21913645 28 7.3
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 65.7 bits (153), Expect = 4e-11
Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +2
Query: 287 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 463
FYP + K RA S + + ++R + GTV ILLAGR+ GKRVV + L SGLLL+
Sbjct: 50 FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106
Query: 464 TGPFAFNSCPLRRIPSA 514
TGPF N P+RR+ A
Sbjct: 107 TGPFKINGVPIRRVNQA 123
Score = 48.0 bits (109), Expect = 8e-06
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = +1
Query: 472 FCIQFVPATPYS*RYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 651
F I VP + YVI TST++ + K+ K F+D YF EG+ +F
Sbjct: 110 FKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYFARDKKAKAKKT---EGE-LFE 164
Query: 652 TKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKK 753
T+KE K +P + +K DQK VD +IKAI PD K
Sbjct: 165 TEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPDLK 199
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 64.1 bits (149), Expect = 1e-10
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Frame = +2
Query: 293 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 466
PT+ + +SS FS + + +R ++ GTV ILLAGR GKRVV + L SGLLLVT
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130
Query: 467 GPFAFNSCPLRRI 505
GPF N P+RR+
Sbjct: 131 GPFKINGVPIRRV 143
Score = 48.4 bits (110), Expect = 6e-06
Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = +1
Query: 472 FCIQFVPATPYS*RYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 651
F I VP + YVI TST++ + + K F+D YF EG+ +F
Sbjct: 133 FKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYFSRDKKQKAKKT---EGE-LFE 187
Query: 652 TKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKK 753
T+KE K +P E +K DQK VD +IKAI A PD K
Sbjct: 188 TEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPDLK 222
>05_07_0258 -
28729620-28729782,28730193-28730339,28730808-28731032,
28731148-28731178,28731424-28731940
Length = 360
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -1
Query: 433 NKYNPLACMSTSEENANSSYLQVGSDPAYMLAEWTATR*GTDFLLSGVEGLPTFEGYCSG 254
N Y + TS + A ++ L +DP+ ++ +T G L + P F GY +
Sbjct: 147 NSYYQKNPVQTSCDFAGTAIL-TSTDPSSSSCKYPSTSTGASVLNTSTPTNPAFGGYDNS 205
Query: 253 PPFF---SPPI 230
PP F SPP+
Sbjct: 206 PPGFGNNSPPL 216
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 368 LKIGTVCILLAGRHAGKRVVLVGILPSG 451
LK G ILL GR+AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEG 32
>01_06_1446 -
37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +2
Query: 542 HSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSMRL* 721
HS+ + + S +TSR SA + KR S P K + S K +Q
Sbjct: 430 HSSDISSSSKSSEVTSRE--SAKVICEPVKRAQASPPLKHLSPIVEHSPKAKIKQD---- 483
Query: 722 SKPLEPDPTRRCSAILKAAFG 784
+PL+PDP ++ + AA G
Sbjct: 484 -EPLQPDPAKQAMEDVDAAVG 503
>10_08_0951 - 21769342-21769752
Length = 136
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 368 LKIGTVCILLAGRHAGKRVVLVGILPSG 451
LK G ILL GR AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEG 32
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 649 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRDTQGG 777
A ++E+ + KT T+DE IK + + +LR+ QGG
Sbjct: 574 AQQQERLAAKQATKTATTTLDEERIKQMINEAKQDILRELQGG 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,603,765
Number of Sequences: 37544
Number of extensions: 494463
Number of successful extensions: 1251
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -