Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0027
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               52   4e-07
SB_34249| Best HMM Match : fn3 (HMM E-Value=0)                         28   7.5  
SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)                28   7.5  
SB_38573| Best HMM Match : UPAR_LY6 (HMM E-Value=0.52)                 28   9.9  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)            28   9.9  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +1

Query: 472 FCIQFVPATPYS*RYVIGTSTRISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXXEGDDIF 648
           F I  VP       YVI TST I + + KLP+H F D+ +                +D+F
Sbjct: 3   FKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYFKGEPKKKK-----RSEDMF 57

Query: 649 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKK 753
               E+  PSEQR  DQK VD+ ++  I A P+ K
Sbjct: 58  EEAAEEKKPSEQRIADQKAVDDQILPKISAVPNMK 92


>SB_34249| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 2195

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 134  FGETHHSVAQIIVPGFFRRFFLSARTCRCGSRLGRRFR 21
            FG    SVA +   G     + +A TCRC  RL   +R
Sbjct: 1857 FGSYRISVAAMNKKGIGPEIYFNAETCRCRKRLTTNWR 1894


>SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)
          Length = 204

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 464 TGPFAFNSCPLRRIPSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 643
           T   A N+C  RR    +  A       AT+NC+  +  +   +  +A    +N +R   
Sbjct: 92  TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGATNNCRRRNE 149

Query: 644 SLPQKKRNT 670
            LP+ +R T
Sbjct: 150 QLPKAQRTT 158



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 464 TGPFAFNSCPLRRIPSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 643
           T   A N+C  RR    +  A       AT+NC+  +  +   +  +A    +N +R   
Sbjct: 114 TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGTTNNCRRHNE 171

Query: 644 SLPQKKRNT 670
            LP+ +R T
Sbjct: 172 QLPKAQRTT 180


>SB_38573| Best HMM Match : UPAR_LY6 (HMM E-Value=0.52)
          Length = 118

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = -1

Query: 541 KFWWRCRSHSARNTA*RARIECKRSSN*KQTAGQNSNKYNPLACMSTSEENANSSYLQVG 362
           K W  C S S         ++C R     + AG  + +Y    C  T   N N +Y + G
Sbjct: 29  KSWRHCNSVSTNTRCPTKTLKCVRVRIRIEEAGNQTTRYFLKGCAKTCSAN-NVAYCRKG 87

Query: 361 SD 356
            D
Sbjct: 88  RD 89


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 361 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCIQFVPATPYS 507
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


>SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)
          Length = 356

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 255 PEQYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGSD 362
           P  Y ++ GSP+   +RK+ PH    HS+   A  D
Sbjct: 112 PMAYLTSTGSPNPQRKRKNDPHRTIDHSSVHRASRD 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,945,955
Number of Sequences: 59808
Number of extensions: 538446
Number of successful extensions: 1469
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)