Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0027
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    62   4e-10
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.93 
Z70286-1|CAA94294.2|  194|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 34/54 (62%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
 Frame = +2

Query: 356 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPSA 514
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI  A
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQA 120



 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 32/82 (39%), Positives = 46/82 (56%)
 Frame = +1

Query: 514 YVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKT 693
           +VI TS ++++   K+P+H ND+YF               G +IFA+ K +Y  SEQRK 
Sbjct: 121 FVIATSLKVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEYTVSEQRKK 174

Query: 694 DQKTVDEAVIKAIGARPDKKVL 759
           D KTVD  ++ AI   P+ K L
Sbjct: 175 DIKTVDAPILAAIKKHPEHKFL 196



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 93  RNYDLGNGVMRFSKSKMFHKKAKYK 167
           RN+DL  GV+RFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 287 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 421
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z70286-1|CAA94294.2|  194|Caenorhabditis elegans Hypothetical
           protein K08C7.4 protein.
          Length = 194

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 640 DIFATKKEKYVPSEQRKTDQ-KTVDEAVIKAIGARP-DKKVLRDTQG 774
           D   TK E  VPSE  KT++ ++V+E  ++    +P DKK  R  +G
Sbjct: 15  DADITKPELVVPSEDPKTEEIESVEEKTVEKSTEKPVDKKGGRPVRG 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,275,468
Number of Sequences: 27780
Number of extensions: 392299
Number of successful extensions: 1073
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)