Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0027
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.46 
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    25   1.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    25   1.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
 Frame = +2

Query: 482 NSCPLRRIPSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 661
           +S P   + +A+ S PPP F  +  +  + S ++++ R  +   +  +A   M  +P   
Sbjct: 365 SSIPKLNLSTALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP--- 421

Query: 662 RNTFHLSSAKPIRRQSMRL*SKPLEPD---PTRR 754
            N  ++S   P+      + + P  P    P RR
Sbjct: 422 -NMSNMSGMPPLPNMPGSMPTMPTMPSMAGPIRR 454


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 726 FDHSLIDCLLIGFALLRWNVFLFFCGKDVITLFA 625
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 29  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 62


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 726 FDHSLIDCLLIGFALLRWNVFLFFCGKDVITLFA 625
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 45  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 78


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 245 EWGTRTVPLKRRKSFYP 295
           EW    VP +R K +YP
Sbjct: 200 EWDILGVPAERHKKYYP 216


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 245 EWGTRTVPLKRRKSFYP 295
           EW    VP  R + +YP
Sbjct: 214 EWDILEVPASRNEEYYP 230


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 289 LPHSGENPCLIWWPSIQQACTQDPTQ 366
           +P   +NP +  W     AC+  P Q
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQ 398


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/44 (22%), Positives = 16/44 (36%)
 Frame = -2

Query: 156 PSCGTSWIWRNASLRCPDHSSWVFS*IFS*CTHLQVRQQAWPPL 25
           P C   W W   +    +H S      +    +LQ  ++ W  L
Sbjct: 53  PVCNGLWRWIRLTYGQTNHISLTLDLEYELVENLQANEKPWSTL 96


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/44 (22%), Positives = 16/44 (36%)
 Frame = -2

Query: 156 PSCGTSWIWRNASLRCPDHSSWVFS*IFS*CTHLQVRQQAWPPL 25
           P C   W W   +    +H S      +    +LQ  ++ W  L
Sbjct: 91  PVCNGLWRWIRLTYGQTNHISLTLDLEYELVENLQANEKPWSTL 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,018
Number of Sequences: 438
Number of extensions: 4900
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)