Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0026
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    27   0.10 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    27   0.10 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    27   0.10 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    26   0.31 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.2  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.9  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.9  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
           +Y F   +  V++ + A     LPP   + +TL V  LL   +FL+ V  T   V   + 
Sbjct: 213 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 272

Query: 65  M--TYFRWIVFM 36
           +  TYF  I+FM
Sbjct: 273 LLGTYFNCIMFM 284


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
           +Y F   +  V++ + A     LPP   + +TL V  LL   +FL+ V  T   V   + 
Sbjct: 213 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 272

Query: 65  M--TYFRWIVFM 36
           +  TYF  I+FM
Sbjct: 273 LLGTYFNCIMFM 284


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
           +Y F   +  V++ + A     LPP   + +TL V  LL   +FL+ V  T   V   + 
Sbjct: 213 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 272

Query: 65  M--TYFRWIVFM 36
           +  TYF  I+FM
Sbjct: 273 LLGTYFNCIMFM 284


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 336 QRKCHHPPLSHEL*GLTLNSTTAAPPFNRNALL 238
           Q   HH P+SH L       T++  PF+ N LL
Sbjct: 344 QAMLHHNPMSHHLKQEPSGFTSSNHPFSINRLL 376


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 411 IAIVCIYFNH*H*IKMTV*IIYLQC-GCPTIPLDFYVKLYF 530
           I ++C+Y+ +   I  TV +++L C     +PL F + +Y+
Sbjct: 108 IILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCIYY 148


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -3

Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
           +Y F   +  V++ + A     LPP   + +TL V  LL   +FL+ V          + 
Sbjct: 213 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAEKIPTTSDAVP 272

Query: 65  M--TYFRWIVFM 36
           +  TYF  I+FM
Sbjct: 273 LIGTYFNCIMFM 284


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -3

Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
           +Y F   +  V++ + A     LPP   + +TL V  LL   +FL+ V          + 
Sbjct: 213 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAEKIPTTSDAVP 272

Query: 65  M--TYFRWIVFM 36
           +  TYF  I+FM
Sbjct: 273 LIGTYFNCIMFM 284


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 606  GNIIYINLFKIQILVDMYSIFNL 538
            G I Y+ +  + +L+ +YS+FN+
Sbjct: 1005 GVIYYVTVPSMYLLLVIYSVFNM 1027


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 606  GNIIYINLFKIQILVDMYSIFNL 538
            G I Y+ +  + +L+ +YS+FN+
Sbjct: 1005 GVIYYVTVPSMYLLLVIYSVFNM 1027


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -2

Query: 606 GNIIYINLFKIQILVDMYSIFNLTCENTIL 517
           G  IY+  F    + D  ++ +  C NT++
Sbjct: 323 GQFIYLRTFGFLEIDDQGTVESFVCVNTLV 352


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,220
Number of Sequences: 336
Number of extensions: 3467
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)