Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0026
(655 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.37
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.37
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.37
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.37
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.48
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.6
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 6.0
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 6.0
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 6.0
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 22 6.0
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 22 6.0
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.37
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -3
Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
+Y F + V++ + A LPP + +TL V LL +FL+ V T V +
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 255
Query: 65 M--TYFRWIVFM 36
+ +YF I+FM
Sbjct: 256 LLGSYFNCIMFM 267
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.37
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -3
Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
+Y F + V++ + A LPP + +TL V LL +FL+ V T V +
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 255
Query: 65 M--TYFRWIVFM 36
+ +YF I+FM
Sbjct: 256 LLGSYFNCIMFM 267
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.37
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -3
Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
+Y F + V++ + A LPP + +TL V LL +FL+ V T V +
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 255
Query: 65 M--TYFRWIVFM 36
+ +YF I+FM
Sbjct: 256 LLGSYFNCIMFM 267
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.37
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -3
Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
+Y F + V++ + A LPP + +TL V LL +FL+ V T V +
Sbjct: 264 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 323
Query: 65 M--TYFRWIVFM 36
+ +YF I+FM
Sbjct: 324 LLGSYFNCIMFM 335
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.4 bits (53), Expect = 0.48
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
+Y F + V++ + A LPP + ++L V LL +FL+ V T +
Sbjct: 233 YYFFNLIVPCVLIASMAVLGFTLPPDSGEKLSLGVTILLSLTVFLNMVAETMPATSDAVP 292
Query: 65 M--TYFRWIVFM 36
+ TYF I+FM
Sbjct: 293 LLGTYFNCIMFM 304
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
+Y F + V++ + A LPP + +TL V LL +FL+ V + +
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVP 255
Query: 65 M--TYFRWIVFM 36
+ +YF I+FM
Sbjct: 256 LIGSYFNCIMFM 267
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
+Y F + V++ + A LPP + +TL V LL +FL+ V + +
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVP 255
Query: 65 M--TYFRWIVFM 36
+ +YF I+FM
Sbjct: 256 LIGSYFNCIMFM 267
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
+Y F + V++ + A LPP + +TL V LL +FL+ V + +
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVP 255
Query: 65 M--TYFRWIVFM 36
+ +YF I+FM
Sbjct: 256 LIGSYFNCIMFM 267
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.6
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
+Y F + V++ + A LPP + +TL V LL +FL+ V + +
Sbjct: 264 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVP 323
Query: 65 M--TYFRWIVFM 36
+ +YF I+FM
Sbjct: 324 LIGSYFNCIMFM 335
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 6.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 548 YLISHAKIQFYIKIQWNGWTTTLQIN 471
YLI + I IK+ W G + L+++
Sbjct: 237 YLIKNQTITCPIKVSWRGNYSCLKVD 262
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 6.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 548 YLISHAKIQFYIKIQWNGWTTTLQIN 471
YLI + I IK+ W G + L+++
Sbjct: 288 YLIKNQTITCPIKVSWRGNYSCLKVD 313
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 6.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 548 YLISHAKIQFYIKIQWNGWTTTLQIN 471
YLI + I IK+ W G + L+++
Sbjct: 237 YLIKNQTITCPIKVSWRGNYSCLKVD 262
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = -2
Query: 645 ITFIIL*HLIVPIGNIIYINLFKIQI 568
+ FI+ L++ +G ++YI++FK ++
Sbjct: 184 VVFIVS-GLLMLVGMVMYISVFKAEV 208
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 21.8 bits (44), Expect = 6.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 467 NYLSAVWLSNHSIGFLCKIVFSHVRLN 547
N+ + NHS +L I+FSH N
Sbjct: 222 NHARLMSQDNHSKEYLVSIMFSHYDRN 248
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,411
Number of Sequences: 438
Number of extensions: 3844
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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