Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0025
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    28   1.4  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    28   1.9  
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    27   2.5  
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    27   2.5  
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.3  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    26   5.7  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   7.5  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    25   10.0 

>SPBC83.13 |||mitochondrial tricarboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 509 LLGAIVSIYKDDGILGFLHGLIPKV 583
           ++  I+SIYK++GI G   G +P++
Sbjct: 246 IMQTIMSIYKNNGIKGLYRGAVPRM 270



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 503 QLLLGAIVSIYKDDGILGFLHGLIP 577
           Q +  AI +I    GILGF  GLIP
Sbjct: 45  QTMAQAIKAIMSRGGILGFYQGLIP 69


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +2

Query: 620  LAYYVNKYFVKTKDLRYYTIPLLTFITSTITYPMVVVSTC-MAVAG-SSLRLATLR 781
            L +Y +  F+  +   +YT+  +  + S  T+ +++ STC M++   S+ R+AT R
Sbjct: 1021 LLFYCSSIFISKE---FYTVEQMVQVLSLATFTLLMASTCIMSLPNVSASRIATSR 1073


>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 387 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 494
           +K+G +D     V    AHPFHVV +  M S  G +
Sbjct: 77  VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 387 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 494
           +K+G +D     V    AHPFHVV +  M S  G +
Sbjct: 77  VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109


>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 578 KVLGDLTCLAVTGVLAYYVNKYF 646
           ++  D+TC  V   L Y+VNK+F
Sbjct: 66  EIANDVTCGRVETALLYFVNKFF 88


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 518 AIVSIYKDDGILGFLHGLIPKVLGDLTCLAVT 613
           AI  IYK +GI GF  G    +L  +  +++T
Sbjct: 272 AIFHIYKTEGINGFFRGYSSNMLKIIPVMSIT 303


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 192 FPVYKVHKGFGWFLRLLQGLIARM 263
           F VYK++K FGW +    G   RM
Sbjct: 175 FLVYKMNKAFGWIMYQQHGPDLRM 198


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 220 SDGFFGCYRGLSQECLVLSPQV 285
           ++GF G Y+GLS   L ++P V
Sbjct: 388 NEGFRGLYKGLSPNLLKVAPSV 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,678,299
Number of Sequences: 5004
Number of extensions: 81073
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)