Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0025
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    25   0.86 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    25   0.86 
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          25   1.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   8.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   8.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +3

Query: 366 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVR-MMASFIGKEE-HYSS---CWA 518
           +PK   ++       ++ TVA ++++PF  V  R MM S   K E  Y S   CWA
Sbjct: 206 DPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWA 261


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +3

Query: 366 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVR-MMASFIGKEE-HYSS---CWA 518
           +PK   ++       ++ TVA ++++PF  V  R MM S   K E  Y S   CWA
Sbjct: 206 DPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWA 261


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 712 CYCACYKCK 686
           CYC C KCK
Sbjct: 2   CYCTCEKCK 10


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 482 YWERRTLQL 508
           +WERRTLQ+
Sbjct: 187 FWERRTLQI 195


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 482 YWERRTLQL 508
           +WERRTLQ+
Sbjct: 240 FWERRTLQI 248


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +2

Query: 623 AYYVNKYFVKTKDLRYYTIPLLTFITSTITY 715
           AYY++++  +  DL YY   +L  + + + +
Sbjct: 181 AYYLHQFAPEQPDLNYYNPVVLDDMQNVLRF 211


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 100 AKVLIQLGYEP 132
           AK+L+Q+G+EP
Sbjct: 163 AKLLLQMGFEP 173


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +2

Query: 623 AYYVNKYFVKTKDLRYYTIPLLTFITSTITY 715
           AYY++++  +  DL YY   +L  + + + +
Sbjct: 181 AYYLHQFAPEQPDLNYYNPVVLDDMQNVLRF 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,845
Number of Sequences: 438
Number of extensions: 6299
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)