Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0025
(832 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g01500.1 68418.m00064 mitochondrial substrate carrier family ... 31 0.94
At3g05290.1 68416.m00577 mitochondrial substrate carrier family ... 31 1.2
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family... 30 1.6
At5g27520.1 68418.m03293 mitochondrial substrate carrier family ... 29 2.9
At4g24570.1 68417.m03521 mitochondrial substrate carrier family ... 29 3.8
At5g48970.1 68418.m06059 mitochondrial substrate carrier family ... 29 5.0
At3g51870.1 68416.m05688 mitochondrial substrate carrier family ... 29 5.0
At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family pr... 29 5.0
At1g12380.1 68414.m01431 expressed protein 29 5.0
At4g17050.1 68417.m02571 expressed protein 28 6.6
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 28 6.6
At2g37890.1 68415.m04651 mitochondrial substrate carrier family ... 28 6.6
At1g25380.1 68414.m03150 mitochondrial substrate carrier family ... 28 6.6
At3g21390.1 68416.m02700 mitochondrial substrate carrier family ... 28 8.7
At1g74240.1 68414.m08598 mitochondrial substrate carrier family ... 28 8.7
At1g72820.1 68414.m08419 mitochondrial substrate carrier family ... 28 8.7
>At5g01500.1 68418.m00064 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 415
Score = 31.1 bits (67), Expect = 0.94
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +2
Query: 518 AIVSIYKDDGILGFLHGLIPKVLGDLTCLAVTGVLAYYVNKYFVKTKDLRYYTIPLL--- 688
AI I K++GI G+ G +P+V+ + AV + AY K + KD + + L
Sbjct: 164 AITLIGKEEGIKGYWKGNLPQVIRIVPYSAVQ-LFAYETYKKLFRGKDGQLSVLGRLGAG 222
Query: 689 --TFITST-ITYPMVVVSTCMAV 748
+TST ITYP+ V+ +AV
Sbjct: 223 ACAGMTSTLITYPLDVLRLRLAV 245
>At3g05290.1 68416.m00577 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 322
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 491 RRTLQLLLGAIVSIYKDDGILGFLHGLIPKVL 586
RRT + + G + +I++ +G+LGF GL ++L
Sbjct: 248 RRTRKTIPGVVYAIWRKEGMLGFFKGLQAQIL 279
>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
protein
Length = 477
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 701 STITYPMVVVSTCMAVAGSSLRLATLRQCQTTLHGKYAG 817
ST+ P +V S+ + GSS RL L Q T+ H K G
Sbjct: 256 STVAPPTIVHSSVLLTFGSSSRLKQLAQTITSSHSKNLG 294
>At5g27520.1 68418.m03293 mitochondrial substrate carrier family
protein
Length = 321
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 491 RRTLQLLLGAIVSIYKDDGILGFLHGLIPKVL 586
+R + + G + +I+K +GILGF GL ++L
Sbjct: 250 KRIRKTIPGVVYAIWKKEGILGFFKGLQAQIL 281
>At4g24570.1 68417.m03521 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 313
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 85 HPMEYAKVLIQLGYEPLAPRRSTTLFGRPAMILPN 189
HP++ KV +QL E AP +T RPA+ PN
Sbjct: 21 HPLDLIKVRLQLHGE--APSTTTVTLLRPALAFPN 53
>At5g48970.1 68418.m06059 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 339
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = +1
Query: 79 ICHPMEYAKVLIQLGYEPLAPRRSTTLFGRPAMILPNVFQYIKYIKASDGFFGCYRGLSQ 258
+CHP++ K Q+ PR + R N+ ++ I S+G+ G Y+G+
Sbjct: 255 VCHPLDVVKKRFQIEGLQRHPRYGARVERRAYR---NMLDGLRQIMISEGWHGLYKGIVP 311
Query: 259 ECLVLSP 279
+ +P
Sbjct: 312 STVKAAP 318
>At3g51870.1 68416.m05688 mitochondrial substrate carrier family
protein peroxisomal Ca-dependent solute carrier -
Oryctolagus cuniculus, EMBL:AF004161
Length = 381
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +2
Query: 524 VSIYKDDGILGFLHGLIPKVLGDLTCLAVTGVLAYYVNK----YFVKTKDLRYYTIPLLT 691
+S+ +D+GI F +GL P ++G +AV + V K + K T L
Sbjct: 229 LSMLRDEGIASFYYGLGPSLVGIAPYIAVNFCIFDLVKKSLPEEYRKKAQSSLLTAVLSA 288
Query: 692 FITSTITYPMVVVSTCMAVAGS 757
I + YP+ V M + G+
Sbjct: 289 GIATLTCYPLDTVRRQMQMRGT 310
>At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 311
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 172 AMILPNVFQYIKYIKAS-DGFFGCYRGLSQECLVLSPQVNSHRR 300
A L V Y++Y++ + G Y G SQE L+P N+H R
Sbjct: 82 ASFLLEVIDYVQYLQEKVQKYEGSYPGWSQEPTKLTPWRNNHWR 125
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 197 WKTLGNIMAGRPNRVVDRRGAKGSYPSWIKTF 102
W + N+ G +VV+RR K +P+W F
Sbjct: 574 WDSKFNVGEGHVEKVVERRFKKSYHPAWAAAF 605
>At4g17050.1 68417.m02571 expressed protein
Length = 298
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 694 YNKHNNIS-NGCGIYLYGSSWF*FKAGNPPAM-PNYPSW 804
YN+H + G GIY G +W+ +AG+ M P P W
Sbjct: 238 YNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQW 276
>At3g19050.1 68416.m02420 kinesin motor protein-related contains
Pfam profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/28 (35%), Positives = 22/28 (78%)
Frame = -2
Query: 762 KLEPATAIQVDTTTIGYVIVLVINVSNG 679
+L+ A +I +T+G+VI+++++V+NG
Sbjct: 443 RLKEAASINKSLSTLGHVIMVLVDVANG 470
>At2g37890.1 68415.m04651 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 337
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 163 GRPAMILPNVFQYIKYIKASDGFFGCYRGLSQECLVLSPQV 285
GR + +F K+I S+GF G YRG+ E + P V
Sbjct: 278 GRARVYNTGLFGTFKHIFKSEGFKGIYRGILPEYYKVVPGV 318
>At1g25380.1 68414.m03150 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 363
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/91 (25%), Positives = 40/91 (43%)
Frame = +1
Query: 7 DCQNMDEIEKERIAALPSQILVTTICHPMEYAKVLIQLGYEPLAPRRSTTLFGRPAMILP 186
D +++ E+ A + + T P++ K +Q+ P AP R +I+
Sbjct: 10 DYRSIREVAANAGAGATAGAIAATFVCPLDVIKTRLQVLGLPEAPASGQ----RGGVIIT 65
Query: 187 NVFQYIKYIKASDGFFGCYRGLSQECLVLSP 279
++ IK +G+ G YRGLS + L P
Sbjct: 66 SLKNIIK----EEGYRGMYRGLSPTIIALLP 92
>At3g21390.1 68416.m02700 mitochondrial substrate carrier family
protein
Length = 335
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = +1
Query: 43 IAALPSQILVTTICHPMEYAKVLIQLGYEPLAPRRSTTLFGRPAMILPNVFQYIKYIKAS 222
+ L S + +CHP++ K Q+ P+ + N+F + I S
Sbjct: 239 LCGLASGTVSKLVCHPLDVVKKRFQVEGLQRHPKYGARV---ELNAYKNMFDGLGQILRS 295
Query: 223 DGFFGCYRGLSQECLVLSP 279
+G+ G Y+G+ + +P
Sbjct: 296 EGWHGLYKGIVPSTIKAAP 314
>At1g74240.1 68414.m08598 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 364
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 512 LGAIVSIYKDDGILGFLHGLIPKVLGDLTCLAVTGVLAYYVNKYF 646
L A+ I++ +G GF G +P+V+ L A+T + ++ F
Sbjct: 292 LDAVGQIWRKEGPQGFFRGSVPRVMWYLPASALTFMAVEFLRDNF 336
>At1g72820.1 68414.m08419 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 349
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 184 PNVFQYIKYIKASDGFFGCYRGLSQECLVLS 276
P++ Q ++ + G+ CYRGL C +S
Sbjct: 291 PSIGQTVRNLVREGGWTACYRGLGPRCASMS 321
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,319,121
Number of Sequences: 28952
Number of extensions: 425009
Number of successful extensions: 1090
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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