Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0019
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47358-10|CAA87438.1|  507|Caenorhabditis elegans Hypothetical p...    32   0.58 
Z47356-9|CAA87420.1|  507|Caenorhabditis elegans Hypothetical pr...    32   0.58 
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    28   9.4  

>Z47358-10|CAA87438.1|  507|Caenorhabditis elegans Hypothetical
           protein ZK1307.8 protein.
          Length = 507

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 278 CGTSSYYKMGVGKPQNYMYMKNVFDKICDMC 370
           CG + +Y   VG   N++    V DK+CD C
Sbjct: 79  CGNAFFYCSNVGHKGNFIPTNRVNDKLCDCC 109


>Z47356-9|CAA87420.1|  507|Caenorhabditis elegans Hypothetical
           protein ZK1307.8 protein.
          Length = 507

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 278 CGTSSYYKMGVGKPQNYMYMKNVFDKICDMC 370
           CG + +Y   VG   N++    V DK+CD C
Sbjct: 79  CGNAFFYCSNVGHKGNFIPTNRVNDKLCDCC 109


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 579 LFFYCLMGGRVHSPPGVKWLLEPV 508
           L +YCL+     SP   KWL EP+
Sbjct: 613 LTYYCLVAMEFISPIQTKWLAEPI 636


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,345,951
Number of Sequences: 27780
Number of extensions: 417852
Number of successful extensions: 842
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)