Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0018
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   1.2  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    27   2.0  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    26   2.7  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   4.7  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   8.2  
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    25   8.2  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   8.2  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 5   LMPNSIYDVLTHLKNKYNDPIFYVTENGWATSPEVG-LEDDDRI 133
           L PNS    +TH + K+  P+   T N    +P+   L D D +
Sbjct: 271 LSPNSSQSQITHNRRKHKLPLNATTNNSVVLTPDTSPLLDSDEV 314


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 76  DVKYGIIVFVLEMCQHVINAVW 11
           D + G++VF++ MCQ++ +  W
Sbjct: 385 DQERGVVVFLMNMCQNIWHIWW 406


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +2

Query: 44  KNKYNDP--IFYVTENGWATSPEV-GLEDDDRITYYRAALENILDSLDAGVRLKGYMAWS 214
           K  + DP  +  +T  G+  +PE+     D  I    A   +IL +L +G RL      S
Sbjct: 44  KQAFGDPKSVAGLTILGFDYAPEIESYIHDASIVISHAGAGSILQTLRSGKRLLVVPNES 103

Query: 215 LMDNYE 232
           LMDN++
Sbjct: 104 LMDNHQ 109


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 328  KEILRSRVIDHDYEP 372
            KE+L+  VIDHD EP
Sbjct: 1076 KELLQEVVIDHDLEP 1090


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 103 RRSRPPVLRDVKYGIIVFVL 44
           R + PP+LR   +GI+V  +
Sbjct: 311 RNAAPPILRHFSFGIVVLAI 330


>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 15  TAFMTC*HISRTNTMIPYFTSRRTGGRLLLKLDWKMTTGL 134
           ++FM    +  T   +  +T +   GRLL+ L W+  TG+
Sbjct: 73  SSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLRWRNETGV 112


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 119 DDDRITYYRAALENILDSLDAGVRLKGYMAWSLMDNYEW 235
           +DD+I  +      +L +L   V+   Y+A++ +D Y++
Sbjct: 448 EDDKIRIWHRESGKLLATLSGHVKCVNYVAYNPVDPYQF 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,091
Number of Sequences: 5004
Number of extensions: 38425
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)