Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0017
         (820 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   6.7  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   8.9  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   8.9  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 387 STRHDKITEGQSTCTRPQCRWTRRL 461
           S R  +   G++TC  P C+   RL
Sbjct: 278 SPRSQRRYTGRATCDCPNCQEAERL 302


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 369 RGAGSASTRHDKITEGQSTCTRPQCRWT 452
           R A   ++  +   + QST  RP  RW+
Sbjct: 342 RSATGGNSASNSSGDAQSTSLRPFSRWS 369


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 774 KLLVHHPQHINGTLT 730
           K L+HHP  + GT T
Sbjct: 262 KTLMHHPVAMTGTKT 276


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +2

Query: 293 PSDALGDDGIPYMTLSYGNGPGYREPRGGQRVDPTR 400
           PSD    + +P+  L   + PG  + +  +  DP++
Sbjct: 328 PSDGATSEALPFELLPLDSEPGMLKRKRQKYHDPSQ 363


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,730
Number of Sequences: 336
Number of extensions: 3934
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)