Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0017
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 40 4e-04
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 0.60
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.2
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 27 4.2
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 4.2
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 26 5.6
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 9.8
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 9.8
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 25 9.8
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 9.8
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 39.9 bits (89), Expect = 4e-04
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Frame = +3
Query: 15 MEPTLAELTEVAIKSL--SRNKE---GFFLFVEGGRIDXXXXXXXXXXXXDETIELSAAV 179
++P L+E+ E A+ L + N++ GFFL +EG RID E +E + A
Sbjct: 274 VQPKLSEMVETALDVLLNATNEDTSKGFFLLIEGSRIDMASHNNDPIAHVYEVMEYNRAF 333
Query: 180 EKARELLSEQDSLIVVTADH 239
E A + + ++ T+DH
Sbjct: 334 EIASAFVEKNGGSLISTSDH 353
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 29.5 bits (63), Expect = 0.60
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 194 AALGAGFINRSDGRPRSRHVLSGYTQR 274
AA A +N ++ RP S HV S YTQ+
Sbjct: 132 AAQSAHVMNSTESRPSSAHVSSSYTQK 158
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.2
Identities = 32/110 (29%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
Frame = -2
Query: 495 PQANTATSSPP*VSESSGTAAGYTYSDPR*SCRVGSTRCPPLGSRYPGPLPYESV-M*GM 319
P + PP + SS ++ PR S GS PP G P P P S G
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPR-SNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374
Query: 318 PSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPRAA--PVLSPP 175
P +S +PP P R P+L + A R + PV +PP
Sbjct: 375 QPPPLSSSRAVSNPPA---PPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 299 DALGDDGIPYMTLSYGNGPGYREPRGGQRVDP 394
DA G++G+ G GPG P GG DP
Sbjct: 69 DAYGEEGLNGQPGGPGGGPGEGFPGGGFGFDP 100
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 297 EGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPRAAPVLSPPP 172
E PR+ PPR P T E P+L N + + +P+ PPP
Sbjct: 357 EKPRL-PPR---PSHTLSELSSPALTSENLSSKPSPLFPPPP 394
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 511 FSGLYEQSHIPHRMAYAACIGPGKHACQHSPHS 609
F G+++ PH + +C G +A H PHS
Sbjct: 224 FFGIFDWD--PHGLCIYSCFKYGSNAYSHEPHS 254
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 506 ASSLASTSRVTSRIAWRTQHASVPASTLANIHHIQLLNLFDIL*NLSLLVKDK 664
+ +L+ S +TSR+ W Q ++V L + L+ + + LSL V D+
Sbjct: 837 SKNLSKNSFMTSRVNWAIQSSAVDYLHLLLVSMNHLIKKYYLEARLSLTVHDE 889
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 158 HRTKRGGGESTGAALGAGFINRSDGRPRSRHVLSGY 265
HR +R G + + G+GF + G PR +++ S Y
Sbjct: 256 HRHRRSTGSLSVGSSGSGFSSGGSGNPR-KNLFSPY 290
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 332 TLSYGNGPGYREPRGGQRVDPT 397
T+SY +GP + + G +R DP+
Sbjct: 294 TISYRSGPEWEQRFGNRRADPS 315
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -2
Query: 516 REEAW*GPQANTATSSPP*VSESSGTAAGYTYSDP 412
REEA P ++TAT PP S S A YS P
Sbjct: 306 REEAAAEPSSSTATDIPPPYSTPS-VAGASDYSTP 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,686
Number of Sequences: 5004
Number of extensions: 62439
Number of successful extensions: 191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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