Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0017
(820 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39060| Best HMM Match : DNA_pol3_beta (HMM E-Value=5.5) 62 7e-10
SB_45076| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_26453| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.023
SB_24182| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.052
SB_32321| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.16
SB_53227| Best HMM Match : rve (HMM E-Value=1.6e-18) 32 0.64
SB_8698| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.64
SB_14074| Best HMM Match : Keratin_B2 (HMM E-Value=0.84) 31 1.1
SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05) 31 1.5
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14) 30 2.0
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16) 30 2.0
SB_54551| Best HMM Match : DUF1515 (HMM E-Value=2.5) 30 2.6
SB_24277| Best HMM Match : EGF (HMM E-Value=2.4e-06) 30 2.6
SB_10368| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 29 4.5
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_39540| Best HMM Match : VWA (HMM E-Value=3.8e-20) 29 6.0
SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 29 6.0
SB_40918| Best HMM Match : DMAP_binding (HMM E-Value=0.48) 28 7.9
>SB_39060| Best HMM Match : DNA_pol3_beta (HMM E-Value=5.5)
Length = 182
Score = 61.7 bits (143), Expect = 7e-10
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +3
Query: 18 EPTLAELTEVAIKSLSRNK--EGFFLFVEGGRIDXXXXXXXXXXXXDETIELSAAVEKAR 191
EP++AE+ E A+ L N +GFFL VE G ID +E + L V KA
Sbjct: 21 EPSIAEMVEKAVSILKNNDNGKGFFLAVEAGLIDIGHHNGIARQALNEVVNLEEGVAKAV 80
Query: 192 ELLSEQDSLIVVTADHAHV 248
E+ ++D+LI+ TADH HV
Sbjct: 81 EMTDKEDTLIISTADHGHV 99
>SB_45076| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 51.2 bits (117), Expect = 1e-06
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Frame = +2
Query: 254 LSGYTQRGGDILG-------PSDALGDDGIPYMTLSYGNGPGYREPRGGQRVDPTRQDYR 412
+SGY +RG I G + D +PY TL Y NGPG + R D T +
Sbjct: 43 ISGYPKRGNPIFGLVVDIYNRTVVASSDKLPYTTLGYANGPGGLKV-NATRADLTMVNTA 101
Query: 413 GSEYVYPAAVPLDSETHGGDDVAVFAWGP 499
++ A SE HGG+DV ++A GP
Sbjct: 102 DKDFKSQALYYQSSEAHGGEDVGIYADGP 130
>SB_26453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Frame = +2
Query: 254 LSGYTQRGGDILG-------PSDALGDDGIPYMTLSYGNGPGYREPRGGQRVDPTRQDYR 412
+SGY +RG I G + D +PY TL Y NGPG + R D T +
Sbjct: 43 ISGYPKRGNPIFGLVVDIYNRTVVASSDKLPYTTLGYANGPGGLKV-NATRADLTMVNTA 101
Query: 413 GSEYVYPAAVPLDSETHGGDDV 478
++ A SE HGG+DV
Sbjct: 102 DKDFKSQALYYQSSEAHGGEDV 123
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 36.7 bits (81), Expect = 0.023
Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 7/200 (3%)
Frame = +2
Query: 8 RYHGADPGRAH-GSGDQIVESQQGRILLVCRGRQDRPRAPRELGPPRSR-RDH-RTKRGG 178
R D GR G G + +GR + + GR DR RA R R D R KRG
Sbjct: 169 RSRSMDLGRGERGRGIDFGRADRGRGINL--GRSDRGRAIDFSRCERGRGMDFGRGKRGP 226
Query: 179 GESTGAA---LGAGFINRSDGRPRSRHVLSGYTQRGGDILGPSDALGDDGIPYMT-LSYG 346
G + G A G G +N G+ +R G + G + GP+ G P G
Sbjct: 227 GINFGRAKRGCGMGTVNNGSGQSGNRG--RGLNRGPGSMKGPNQNRGRGQGPNRGGTGRG 284
Query: 347 NGPGYREPRGGQRVDPTRQDYRGSEYVYPAAVPLDSETHGGDDVAVFAWGPHHASSLAST 526
GPG GG + D ++ + P +++ G+ P + +T
Sbjct: 285 RGPGPYPYGGGYKKDTLSKNIGIPARLNQPIKPFNTQATPGESPNP---APATEGTKINT 341
Query: 527 SRVTSRIAWRTQHASVPAST 586
+ VTS+ AW TQ+ + +T
Sbjct: 342 T-VTSKPAWLTQNPNTTTTT 360
>SB_24182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 35.5 bits (78), Expect = 0.052
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 18 EPTLAELTEVAIKSLSRNKEGFFLFVE 98
EP++ E+ E AIK L N +GFFL VE
Sbjct: 100 EPSITEMVESAIKILKNNNKGFFLMVE 126
>SB_32321| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 33.9 bits (74), Expect = 0.16
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Frame = +2
Query: 254 LSGYTQRGGDILGPSDALG------DDGIPYMTLSYGNGPGYREPRGGQRVDPTRQDYRG 415
++GY +RG ILG + G +D +P+ TL Y NGP G+R + T D
Sbjct: 17 MAGYPERGNPILGLAKDGGKLLLSANDKLPFTTLGYMNGP---SAFFGKRKNLTSTDTLS 73
Query: 416 SEYVYPAAVPLDS--ETHGGDDV 478
+++ + + E+HGG DV
Sbjct: 74 AKFQQQSLYNGNDEYESHGGQDV 96
>SB_53227| Best HMM Match : rve (HMM E-Value=1.6e-18)
Length = 305
Score = 31.9 bits (69), Expect = 0.64
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 80 ILLVCRGRQDRPRAPRELGPPRSRRD--HRTKRGGGESTGAALGAGFINRSDGRPRSR 247
I L R Q R +PR GPPR R HR KRG G G + G P ++
Sbjct: 234 IKLRARASQSRKASPR--GPPRGRNGGVHRRKRGRPSGQGPTASDGPVVDKQGVPNTK 289
>SB_8698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 31.9 bits (69), Expect = 0.64
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 80 ILLVCRGRQDRPRAPRELGPPRSRRD--HRTKRGGGESTGAALGAGFINRSDGRPRSR 247
I L R Q R +PR GPPR R HR KRG G G + G P ++
Sbjct: 93 IKLRARASQSRKASPR--GPPRGRNGGVHRRKRGRPSGQGPTASDGPVVDKQGVPNTK 148
>SB_14074| Best HMM Match : Keratin_B2 (HMM E-Value=0.84)
Length = 153
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +3
Query: 357 GTASRGAGSASTRHDKITEGQSTCTRPQCRWTRRLTAETTW 479
G SRG G +T STCTRP R T R A TW
Sbjct: 109 GMRSRGRGLRNTACST-----STCTRPYSRGTNRTAATATW 144
>SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05)
Length = 449
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = -2
Query: 396 VGSTRCPPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRL 217
+GST P G P P++ +M P+ P G +PP+ + +G+ L
Sbjct: 34 MGSTPNPHKGIMDSTPNPHKGIMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMGSTL 93
Query: 216 MNPAPRAAPVLSPP 175
P L+PP
Sbjct: 94 NPPKGIMGSTLNPP 107
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 396 VGSTRCPPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPR 271
+GST PP G P P++ +M P+ P G +PP+
Sbjct: 122 MGSTLNPPKGIMGSTPNPHKGIMGSSPNPPKGIMGSTPNPPK 163
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 396 VGSTRCPPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPR 271
+GST PP G P P++ +M P+ P G +PP+
Sbjct: 155 MGSTPNPPKGIMGSLPNPHKEIMGSSPNPPKGIMGSTPNPPK 196
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 396 VGSTRCPPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPR 271
+GS+ PP G P P + +M +P+ P G +PP+
Sbjct: 177 MGSSPNPPKGIMGSTPNPPKGIMGSLPNPPKGIMGSTPNPPK 218
>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
Length = 221
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/76 (35%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Frame = +2
Query: 65 SQQGRILLVCRGRQDRPRAPRELGPPRSRRDHRTKRGGGESTGAALGAGFINR-----SD 229
S QGR+ RGR R + R R R RGG S G AGF R +
Sbjct: 87 SVQGRLGARGRGRGMARGPGRGMVGARGRAGFRGNRGGFTSPGRGGAAGFRGRGRGGMTR 146
Query: 230 GRPRSRHVLSGYTQRG 277
G PR R G RG
Sbjct: 147 GGPRGRASFGGRGARG 162
>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
Length = 896
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -2
Query: 318 PSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPRAAPVLSPP 175
PS P S P +PP P+ +R +PS NP P AP PP
Sbjct: 147 PSKPHPSPTPAQAPPHS-RPVAA--KRPMPSTPDQNPCPSEAPPRLPP 191
>SB_54551| Best HMM Match : DUF1515 (HMM E-Value=2.5)
Length = 260
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 336 SRMATVPGTASRGAGSASTRHDKITEGQST 425
SRM T TAS+ AG+AS ITEG +T
Sbjct: 47 SRMHTAHRTASQTAGTASAETSFITEGAAT 76
>SB_24277| Best HMM Match : EGF (HMM E-Value=2.4e-06)
Length = 433
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 396 VGSTRCPPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPR 271
+GST PP G P P++ +M P+ P G +PP+
Sbjct: 360 MGSTPNPPKGIMDSTPHPHKGIMGSTPNPPKRIMGSLPNPPK 401
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/78 (24%), Positives = 31/78 (39%)
Frame = -2
Query: 396 VGSTRCPPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRL 217
+GST PP G P P + +M P+ P G +PP+ + +G+
Sbjct: 250 MGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMGSTP 309
Query: 216 MNPAPRAAPVLSPPPRLV 163
P +PP R++
Sbjct: 310 NPPKGIMGSTPNPPKRIM 327
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 396 VGSTRCPPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPR 271
+GST PP G P P + +M +P+ P G +PP+
Sbjct: 305 MGSTPNPPKGIMGSTPNPPKRIMGSLPNPPKGIMGSTPNPPK 346
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = -2
Query: 396 VGSTRCPPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRL 217
+GS PP G P P + +M P+ P G +PP+ + +G+
Sbjct: 327 MGSLPNPPKGIMGSTPNPPKEIMGSTPNPPKGIMGSTPNPPKGIMDSTPHPHKGIMG-ST 385
Query: 216 MNPAPRAAPVLSPPPR 169
NP R L PP+
Sbjct: 386 PNPPKRIMGSLPNPPK 401
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 396 VGSTRCPPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPR 271
+GST PP G P P + +M P+ P G +PP+
Sbjct: 228 MGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPK 269
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 396 VGSTRCPPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPR 271
+GST PP G P P + +M P+ P G +PP+
Sbjct: 239 MGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPK 280
>SB_10368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = -2
Query: 351 PLPYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RE-RGLPSLRLMNPAP--RAAPVLS 181
PLP + MP P+ P M P + PL R +P L M P P R P +
Sbjct: 242 PLPAMRPLPAMPPLPAMRPLPAMRPLPAMRPLPAMRPLPAMPPLPAMRPLPAMRPLPAMR 301
Query: 180 PPPRL 166
P P +
Sbjct: 302 PLPAM 306
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = -2
Query: 378 PPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPR 199
PP+ S+ P PLP V M S P G +++PP P + P + P P
Sbjct: 922 PPMSSQ-PQPLPGNQVNPPMSSQPQPPPGNQVNPPMSSQPQPPPGNQVNPPMS-SQPQPP 979
Query: 198 AAPVLSPP 175
++PP
Sbjct: 980 PGNQVNPP 987
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 29.1 bits (62), Expect = 4.5
Identities = 42/123 (34%), Positives = 43/123 (34%), Gaps = 17/123 (13%)
Frame = +2
Query: 98 GRQDRPRAPRELGPPRSRRDHRTKRGGGESTGAALGAGFINRSDGRPRSRHVLSGYTQRG 277
G +DR R G SRR R GGG G G G PR GY Q G
Sbjct: 402 GNKDRQRGQSGFGSLNSRRGGRGGPGGGYEGRGRGGRG--GPRGGGPRGYD--GGYGQ-G 456
Query: 278 GDILGPSDALGDD----GIPYMTLS----------YGNGP---GYREPRGGQRVDPTRQD 406
G G S DD G Y YG GP G R RGG R P R
Sbjct: 457 GGYEGYSGGYRDDYGYGGGSYDHYDSYYGGGYDDYYGGGPPRGGPRGGRGGSRGGPPRGA 516
Query: 407 YRG 415
RG
Sbjct: 517 PRG 519
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/69 (31%), Positives = 23/69 (33%)
Frame = -2
Query: 378 PPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPR 199
PP+GS GP P PS PS P PP P G P P P
Sbjct: 2141 PPMGSSRYGPPPPMGPARHSPSGPSPLGAPPSVPPPMGAPPSGPPPMGAPP---SGPPPM 2197
Query: 198 AAPVLSPPP 172
P PP
Sbjct: 2198 GTPPSGHPP 2206
>SB_39540| Best HMM Match : VWA (HMM E-Value=3.8e-20)
Length = 298
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 212 FINRS-DGRPRSRHVLSGYTQRGGDILGPSDALGDDGIPYMTLSYGN 349
FIN G P+ +V++G R L PS +L DDG+ +L GN
Sbjct: 196 FINSGRHGVPKMLYVMTGGNSRDRVAL-PSRSLRDDGVQVYSLGLGN 241
>SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = +2
Query: 320 IPYMTLSYGNGPGYREPRGGQRVDPTRQDYRGSEYVYPAAVPLDSETHGGDDVAVF 487
+ Y+ YG G Y + G+R P D E PL SE G +D AVF
Sbjct: 270 VEYVDHRYGEGNVYSPNQEGERGYPWSADMESEEEEKGEGAPLISEA-GKEDDAVF 324
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 28.7 bits (61), Expect = 6.0
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Frame = -2
Query: 378 PPLGSRYPGPLP-YESVM*GMPSS----PSASEG-----PRMSPPRCVYPLRT*RERGLP 229
P + YP +P Y S G P++ PSA+ G PR P YP T E G+P
Sbjct: 333 PSANTGYPTAIPGYSSANTGYPTAIPGYPSANTGYPTATPRYPPASTGYPTVTHPENGIP 392
Query: 228 S 226
S
Sbjct: 393 S 393
>SB_40918| Best HMM Match : DMAP_binding (HMM E-Value=0.48)
Length = 366
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 329 MTLSYGNGPGYREPRGGQRVDPTRQD 406
+TL+ GN YR P G+R +P +QD
Sbjct: 8 LTLTKGNKSWYRAPPRGRRCNPGQQD 33
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,534,838
Number of Sequences: 59808
Number of extensions: 554780
Number of successful extensions: 1819
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1801
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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