Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0017
(820 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 33 0.32
AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math ... 31 0.75
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 29 3.0
Z78201-2|CAB01588.1| 324|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF465981-1|AAL76993.1| 324|Caenorhabditis elegans cuticle colla... 29 4.0
AF262406-1|AAL08218.1| 324|Caenorhabditis elegans cuticle colla... 29 4.0
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 29 5.3
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 29 5.3
Z82053-2|CAB04835.1| 365|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z34533-5|CAA84298.1| 781|Caenorhabditis elegans Hypothetical pr... 28 7.0
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 7.0
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 7.0
Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z80789-4|CAC35816.1| 350|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z69788-9|CAC35811.1| 350|Caenorhabditis elegans Hypothetical pr... 28 9.2
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 28 9.2
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 28 9.2
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 32.7 bits (71), Expect = 0.32
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +2
Query: 167 KRGGGESTGAALGAGFINRSDGRPRSRHVLSGYTQRGGDILGPSDAL-GDDGIPYMTLSY 343
+RGGG S G G G +R + R G +RGG G D G G Y Y
Sbjct: 169 RRGGGSSGGGRFGGGGGDRFNDRGSRGGDRYGGDRRGGGGGGGGDRYGGGGGDRYGGDRY 228
Query: 344 GNGPGYR---EPRGGQR 385
G G G R + RGG R
Sbjct: 229 GGGGGRRGSPDRRGGFR 245
>AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math
domain containingprotein 47 protein.
Length = 683
Score = 31.5 bits (68), Expect = 0.75
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 324 GMPSSPSASEGPRMSPPRCVYP 259
G PSSPSA E P PP +YP
Sbjct: 369 GAPSSPSAPEAPSEPPPPKIYP 390
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -2
Query: 345 PYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPR-AAPVLSPPP 172
P ++ G P PS++ PR +PP P R P + AP APV S P
Sbjct: 224 PPKTTAAGAPKRPSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRAPSPKAPVASVAP 282
>Z78201-2|CAB01588.1| 324|Caenorhabditis elegans Hypothetical
protein ZK836.1 protein.
Length = 324
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 287 LGPSDALGDDGIPYMTLSYGNGPGYREPRGGQRVDPTRQDYRGSE 421
+GP+ A GDDG P + G+ R GQR P Q G E
Sbjct: 208 MGPTGAPGDDGAPGASGMKGDDAEKPVGRQGQRGQPGEQGPDGEE 252
>AF465981-1|AAL76993.1| 324|Caenorhabditis elegans cuticle collagen
LON-3 protein.
Length = 324
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 287 LGPSDALGDDGIPYMTLSYGNGPGYREPRGGQRVDPTRQDYRGSE 421
+GP+ A GDDG P + G+ R GQR P Q G E
Sbjct: 208 MGPTGAPGDDGAPGASGMKGDDAEKPVGRQGQRGQPGEQGPDGEE 252
>AF262406-1|AAL08218.1| 324|Caenorhabditis elegans cuticle collagen
protein LON-3 protein.
Length = 324
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 287 LGPSDALGDDGIPYMTLSYGNGPGYREPRGGQRVDPTRQDYRGSE 421
+GP+ A GDDG P + G+ R GQR P Q G E
Sbjct: 208 MGPTGAPGDDGAPGASGMKGDDAEKPVGRQGQRGQPGEQGPDGEE 252
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.3
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 11/136 (8%)
Frame = +2
Query: 2 GTRYHGADPGRAHGSGDQIVES---QQGRILLVC-RGRQDRPRAPRELGPPRSRRDHRTK 169
G + H PG+A G V Q + + C +G AP + GP +
Sbjct: 103 GDKGHDGQPGQAGKPGQPGVAGPSHHQKQECIKCPQGLPGPAGAPGQPGPKGPNGNPGAP 162
Query: 170 -RGGGEST----GAALGAGFINRSDGRPRSRHVLSGYTQRGGDILGPSDALGDDGIPYM- 331
+GGG+ G A AG ++ G P + QRG + GPS A G G P
Sbjct: 163 AQGGGQGPPGPPGPAGSAGSPGQA-GAPGNPGSPGKSGQRGRGLPGPSGAPGSQGPPGAP 221
Query: 332 -TLSYGNGPGYREPRG 376
GN PG P G
Sbjct: 222 GQPGSGNAPGPAGPPG 237
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 28.7 bits (61), Expect = 5.3
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Frame = -2
Query: 495 PQANTATSSPP*VSESS--GTAAG-YTYSDPR*SCRVGSTRCPPLGSRYPGPLPYESVM* 325
P + T+ PP ++ GT A T + P +TR PP +R P P V
Sbjct: 286 PSSGTSAPQPPPRGSTAAPGTRAPPATRAPPATRAPPATTRAPPATTR-PAPASQPPVRE 344
Query: 324 ------GMPS-SPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPRAAPVLSPPP 172
G PS +P P S P YP + PS +P+ A P S PP
Sbjct: 345 PETPDSGYPSPAPQEPAHPSPSYPSPSYPSPSYPSPSYPSPSYPSPSYPAEPAYSVPP 402
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Frame = -2
Query: 378 PPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPR 199
P GS P PY ++M P S+ P +P G P MNP+P
Sbjct: 106 PTYGSSTGYPYPYPTMMMPQQGIPGPSQHPATPSYYIQHPPPPSMSNGAPYYPHMNPSPY 165
Query: 198 AAP----VLSPPPRLV 163
P V PP ++
Sbjct: 166 YQPRPNYVTQPPAPII 181
>Z82053-2|CAB04835.1| 365|Caenorhabditis elegans Hypothetical
protein T26E3.2 protein.
Length = 365
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 14 HGADPGRAHGSGDQIVESQQGRILLVCRGRQDRPRAP-RELGPPRSRRDH 160
H + R G+GD +VE+ G +++ PR P +LG R R H
Sbjct: 20 HTPEASRLMGNGDSVVENLNGHTNGAVAKKKNEPRVPDMQLGKCRYVRLH 69
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Frame = -2
Query: 378 PPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RERGLPSL----RLMN 211
PP+ + P P P GMP PS P M+ P RG+P R
Sbjct: 109 PPMPT--PMPFPQHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYP 166
Query: 210 PAPRAAPVLSPPP 172
PAP A V PPP
Sbjct: 167 PAP-APGVYMPPP 178
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Frame = -2
Query: 378 PPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RERGLPSL----RLMN 211
PP+ + P P P GMP PS P M+ P RG+P R
Sbjct: 109 PPMPT--PMPFPQHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYP 166
Query: 210 PAPRAAPVLSPPP 172
PAP A V PPP
Sbjct: 167 PAP-APGVYMPPP 178
>Z34533-5|CAA84298.1| 781|Caenorhabditis elegans Hypothetical
protein B0285.7 protein.
Length = 781
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -2
Query: 588 SVLAGTDACCVRHAMRDV 535
+++ GT ACCV HA+R++
Sbjct: 739 NIVEGTAACCVEHAIREM 756
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 50 DQIVESQQGRILLVCRGRQD-RPRAPRELGPPRSRRDHRTKRGGGESTGAALGAG 211
+QI S + V RQ+ + + PR +GPP R + K GG S G+ G+G
Sbjct: 1019 EQIELSNVEPVSFVTPARQESQTQKPRIVGPPIRRPRPKNKNSGGGSGGSG-GSG 1072
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 50 DQIVESQQGRILLVCRGRQD-RPRAPRELGPPRSRRDHRTKRGGGESTGAALGAG 211
+QI S + V RQ+ + + PR +GPP R + K GG S G+ G+G
Sbjct: 1116 EQIELSNVEPVSFVTPARQESQTQKPRIVGPPIRRPRPKNKNSGGGSGGSG-GSG 1169
>Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical
protein T24D1.2 protein.
Length = 464
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 318 ASPT*RSRMATVPGTASRGAGSASTRHDKITEGQSTCTR 434
ASP RSR+ + GT+ G S+S+ + T G ++ R
Sbjct: 59 ASPYSRSRIRSTAGTSDAGPSSSSSVRGRGTRGTTSARR 97
>Z80789-4|CAC35816.1| 350|Caenorhabditis elegans Hypothetical
protein F09A5.4c protein.
Length = 350
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 494 GPHHASSLASTSRVTSRIAWRTQH 565
GPHH S + RV+S IA QH
Sbjct: 26 GPHHQQSASEPGRVSSSIATGHQH 49
>Z69788-9|CAC35811.1| 350|Caenorhabditis elegans Hypothetical
protein F09A5.4c protein.
Length = 350
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 494 GPHHASSLASTSRVTSRIAWRTQH 565
GPHH S + RV+S IA QH
Sbjct: 26 GPHHQQSASEPGRVSSSIATGHQH 49
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 27.9 bits (59), Expect = 9.2
Identities = 25/75 (33%), Positives = 27/75 (36%)
Frame = +2
Query: 152 RDHRTKRGGGESTGAALGAGFINRSDGRPRSRHVLSGYTQRGGDILGPSDALGDDGIPYM 331
RD R GG G GF R R GY GGD D GD G
Sbjct: 248 RDRRESSGGFRDNRGG-GGGFGGGGRDRFNDRSGGGGY---GGDRDRGGDRGGDRGGSRY 303
Query: 332 TLSYGNGPGYREPRG 376
+ G+G GYR G
Sbjct: 304 STGGGSGGGYRSGGG 318
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/71 (26%), Positives = 28/71 (39%)
Frame = -2
Query: 378 PPLGSRYPGPLPYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPR 199
PP S Y++ PS P+ + + P V P+ + P +NP P
Sbjct: 397 PPAASTASNSSGYQAPYYSPPSYPTQQQSSYV--PSAVPPMFSATSAPTPPTSYVNPIPP 454
Query: 198 AAPVLSPPPRL 166
AP+ P P L
Sbjct: 455 PAPLNFPMPSL 465
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,045,328
Number of Sequences: 27780
Number of extensions: 394036
Number of successful extensions: 1355
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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