Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0017
(820 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 34 0.099
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 34 0.099
At5g38560.1 68418.m04662 protein kinase family protein contains ... 34 0.099
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 33 0.23
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 33 0.23
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden... 32 0.53
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 32 0.53
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 1.2
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 1.6
At2g25625.2 68415.m03071 expressed protein 30 2.1
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 30 2.1
At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) / ovule... 29 3.7
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 4.9
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 4.9
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 29 4.9
At1g76010.1 68414.m08825 expressed protein 29 4.9
At1g70180.2 68414.m08076 sterile alpha motif (SAM) domain-contai... 28 6.5
At1g70180.1 68414.m08075 sterile alpha motif (SAM) domain-contai... 28 6.5
At2g27390.1 68415.m03306 proline-rich family protein contains pr... 28 8.6
At1g26150.1 68414.m03192 protein kinase family protein similar t... 28 8.6
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 34.3 bits (75), Expect = 0.099
Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Frame = +2
Query: 95 RGRQDRPRAPRELGPPRSRRDHRTKR-GGGESTGAALGAGFI--NRSDGR-PRSRHVLSG 262
RG D R G S R + + R GG +G + G+G N S G+ P +
Sbjct: 131 RGGGDSDRGGGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPS 190
Query: 263 YTQRGGDILGPSDALGDDGIPYMTLSYGNGPGYREPRGGQRVDPTRQDYRG 415
Y G P G + +P T G P Y PRGG D RG
Sbjct: 191 YDGSGS--YPPPTGYGMEAVPPPTSYSGGPPSYGGPRGGYGSDAPSTGGRG 239
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 34.3 bits (75), Expect = 0.099
Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Frame = +2
Query: 95 RGRQDRPRAPRELGPPRSRRDHRTKR-GGGESTGAALGAGFI--NRSDGR-PRSRHVLSG 262
RG D R G S R + + R GG +G + G+G N S G+ P +
Sbjct: 131 RGGGDSDRGGGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPS 190
Query: 263 YTQRGGDILGPSDALGDDGIPYMTLSYGNGPGYREPRGGQRVDPTRQDYRG 415
Y G P G + +P T G P Y PRGG D RG
Sbjct: 191 YDGSGS--YPPPTGYGMEAVPPPTSYSGGPPSYGGPRGGYGSDAPSTGGRG 239
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 34.3 bits (75), Expect = 0.099
Identities = 30/99 (30%), Positives = 39/99 (39%)
Frame = -2
Query: 471 SPP*VSESSGTAAGYTYSDPR*SCRVGSTRCPPLGSRYPGPLPYESVM*GMPSSPSASEG 292
SPP S SS TA + P PP + P P+ S + SSP S
Sbjct: 11 SPP-SSNSSTTAPPPLQTQPTTPSAPPPVTPPPSPPQSPPPVVSSSPPPPVVSSPPPSSS 69
Query: 291 PRMSPPRCVYPLRT*RERGLPSLRLMNPAPRAAPVLSPP 175
P SPP P T P + + +P P + P +PP
Sbjct: 70 PPPSPPVITSPPPTVASSPPPPVVIASPPP-STPATTPP 107
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 33.1 bits (72), Expect = 0.23
Identities = 26/97 (26%), Positives = 33/97 (34%)
Frame = +2
Query: 95 RGRQDRPRAPRELGPPRSRRDHRTKRGGGESTGAALGAGFINRSDGRPRSRHVLSGYTQR 274
RGR R + L P RT+ G + AA G F++ + H S
Sbjct: 1449 RGRGRPKRTDKALTPVSLSAVSRTQATGNAISSAATGLDFVSSDKRLEAASHPTSSLALT 1508
Query: 275 GGDILGPSDALGDDGIPYMTLSYGNGPGYREPRGGQR 385
D+ GP P T G G G RG R
Sbjct: 1509 SPDLSGPPGFQSLPASPAPTPIRGRGRGRSRGRGAGR 1545
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 33.1 bits (72), Expect = 0.23
Identities = 26/97 (26%), Positives = 33/97 (34%)
Frame = +2
Query: 95 RGRQDRPRAPRELGPPRSRRDHRTKRGGGESTGAALGAGFINRSDGRPRSRHVLSGYTQR 274
RGR R + L P RT+ G + AA G F++ + H S
Sbjct: 1449 RGRGRPKRTDKALTPVSLSAVSRTQATGNAISSAATGLDFVSSDKRLEAASHPTSSLALT 1508
Query: 275 GGDILGPSDALGDDGIPYMTLSYGNGPGYREPRGGQR 385
D+ GP P T G G G RG R
Sbjct: 1509 SPDLSGPPGFQSLPASPAPTPIRGRGRGRSRGRGAGR 1545
>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
identical to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 355
Score = 31.9 bits (69), Expect = 0.53
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +2
Query: 113 PRAP-RELGPPRSRRDHRTK--RGGGESTGAALGAGFINRSDGRPRSRHVLSGYTQRG-- 277
P+ P + L P ++ R+ R+ RGGG G G G NR DG + GYT+
Sbjct: 45 PKLPSKPLPPAQAVREARSDAPRGGGGRGGFNRGRGGYNRDDG---NNGYSGGYTKPSGE 101
Query: 278 GDILGPS-DALGDDGIPYMTL-SYGNGPGYREPRGG 379
GD+ S + G G P + G GPG RGG
Sbjct: 102 GDVSKSSYERRGGGGAPRGSFRGEGGGPGGGR-RGG 136
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 31.9 bits (69), Expect = 0.53
Identities = 28/78 (35%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +2
Query: 149 RRDHRTKRGGGESTGAA--LGAGFINRSDGRPRSRHVLSGYTQRGGDILGPSDALGDDGI 322
R +R RG G G G G+ R DGR R GY+ R GD G GD G
Sbjct: 3 RGGYRGGRGDGRGRGGGGDRGRGYSGRGDGRGRGGDGDRGYSGR-GDGHGRGGG-GDRGR 60
Query: 323 PYMTLSYGNGPGYREPRG 376
Y G G G RG
Sbjct: 61 GYSGRGDGRGRGGGGDRG 78
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +2
Query: 173 GGGESTGAALGAGFINRSDGRP--RSRHVLSGYTQRGGDILGPSDALGDDGIPYMTLSYG 346
GG G + G+G+ R D + ++ SGY GG G G +G+ YG
Sbjct: 206 GGFPGYGGSGGSGYEGRVDSNRYMQPQNTGSGYPPYGGSGYGTGYGYGSNGV-----GYG 260
Query: 347 NGPGYREPRGGQRVDPT 397
GY P G +P+
Sbjct: 261 GFGGYGNPAGAPYGNPS 277
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Frame = -2
Query: 375 PLGSRYPGP-----LPYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMN 211
P G+R P P LP V +PS P G PP P R GLPS +
Sbjct: 437 PTGARLPSPSIEQRLPSPPVAQRLPSPPPRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIG 496
Query: 210 PAPRAAPVLSPPP 172
+ A + SP P
Sbjct: 497 GSHAANHLESPSP 509
>At2g25625.2 68415.m03071 expressed protein
Length = 151
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 506 ASSLASTSRVTSRIAWRTQHASVP 577
A SLAS + TS+I+WRT++ + P
Sbjct: 19 AQSLASLLKTTSKISWRTENETEP 42
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 29.9 bits (64), Expect = 2.1
Identities = 28/107 (26%), Positives = 39/107 (36%)
Frame = -2
Query: 495 PQANTATSSPP*VSESSGTAAGYTYSDPR*SCRVGSTRCPPLGSRYPGPLPYESVM*GMP 316
P A+ T SPP VS T P + + PP P P P P
Sbjct: 104 PPASAPTVSPPPVSPPPAP----TSPPPTPASPPPAPASPPPAPASPPPAPVSPPPVQAP 159
Query: 315 SSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPRAAPVLSPP 175
S S P +P + + R P+ + P+P + PVL+ P
Sbjct: 160 SPISLPPAPAPAPTKHKRKHKHKRHHHAPAPAPIPPSPPSPPVLTDP 206
>At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) /
ovule-specific homeobox protein A20 nearly identical to
meristem L1 layer homeobox protein A20 (AtML1)
[Arabidopsis thaliana] GI:1881536, protodermal factor2
(PDF2) [Arabidopsis thaliana] GI:14276060
Length = 762
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 170 RGGGESTGAALGAGFINRSDGRPRSRHVLSGYTQRGGDILGPSDALGDDGIPYMTLSYGN 349
RGGG S A+ GAG G + V++ GG +L + + D +P LS G+
Sbjct: 681 RGGGGSANASAGAGV--EGGGEGNNLEVVTTTGSCGGSLLTVAFQILVDSVPTAKLSLGS 738
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 378 PPLGSRYPGPLPY--ESVM*GMPSSPSASEGPRMSPP 274
PP G +YP P P+ ++ G +PS+SE + PP
Sbjct: 634 PPYGMQYPPPPPHVTQAPPPGTTQNPSSSEPQQSFPP 670
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 378 PPLGSRYPGPLPY--ESVM*GMPSSPSASEGPRMSPP 274
PP G +YP P P+ ++ G +PS+SE + PP
Sbjct: 634 PPYGMQYPPPPPHVTQAPPPGTTQNPSSSEPQQSFPP 670
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 28.7 bits (61), Expect = 4.9
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Frame = -2
Query: 495 PQANTATSSPP*VSESSGTAAGYTYSDPR*SCRVGSTRCPPLGSRYPGPL-PYESVM*GM 319
P SPP S G+ + S P S + S PP S P P+ P ++ +
Sbjct: 527 PSPPITVPSPPSTPTSPGSPP--SPSSPTPSSPIPS---PPTPSTPPTPISPGQNSPPII 581
Query: 318 PSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPRAAPVLSPPP 172
PS P P SP + P+ +PS ++ P P + P +P P
Sbjct: 582 PSPPFTGPSPPSSPSPPLPPV-------IPSPPIVGPTPSSPPPSTPTP 623
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 28.7 bits (61), Expect = 4.9
Identities = 27/83 (32%), Positives = 34/83 (40%)
Frame = +2
Query: 137 PPRSRRDHRTKRGGGESTGAALGAGFINRSDGRPRSRHVLSGYTQRGGDILGPSDALGDD 316
PP+ R + +G G G G+ DG P+ R G +Q G GPS G
Sbjct: 243 PPQGRGGYDGPQGRGGYDGPQGRRGY----DGPPQGRGGYDGPSQGRGGYDGPSQGRGG- 297
Query: 317 GIPYMTLSYGNGPGYREPRGGQR 385
Y S G G GY P+G R
Sbjct: 298 ---YDGPSQGRG-GYDGPQGRGR 316
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +2
Query: 95 RGRQDRPRAPRE-LGPPRSRRDHRTKRGGGESTGAALGA--GFINRSDGRP 238
RG D P R P+ R R + GG G G GF NRSDG P
Sbjct: 295 RGGYDGPSQGRGGYDGPQGRGRGRGRGRGGRGRGGGRGGDGGFNNRSDGPP 345
>At1g70180.2 68414.m08076 sterile alpha motif (SAM)
domain-containing protein contains Pfam profile PF00536:
SAM domain (Sterile alpha motif)
Length = 460
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 23 DPGRAHGSG-DQIVESQQGRILLVCRGRQDRPRAPRELGPPRSRRDHRTKRGGGESTGA 196
D GR G DQ GR+ R R A R +GPPR + R+ R ++ A
Sbjct: 230 DAGRRFGPPRDQSPPRNAGRVTGSPRDRSPPRNAGRRMGPPRDQSPPRSTRSFSSNSRA 288
>At1g70180.1 68414.m08075 sterile alpha motif (SAM)
domain-containing protein contains Pfam profile PF00536:
SAM domain (Sterile alpha motif)
Length = 456
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 23 DPGRAHGSG-DQIVESQQGRILLVCRGRQDRPRAPRELGPPRSRRDHRTKRGGGESTGA 196
D GR G DQ GR+ R R A R +GPPR + R+ R ++ A
Sbjct: 230 DAGRRFGPPRDQSPPRNAGRVTGSPRDRSPPRNAGRRMGPPRDQSPPRSTRSFSSNSRA 288
>At2g27390.1 68415.m03306 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 27.9 bits (59), Expect = 8.6
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = -2
Query: 369 GSRYPGPLPYESVM*GMPSSP--SASEGPRMSPP-RCVYPLRT*---RERGLPSLRLMNP 208
G+ P PL + + P SP S S PR+ PP ++P R P L P
Sbjct: 25 GTCCPPPLVFPLLPLSPPPSPPPSPSSPPRLPPPFPALFPPEPPLPPRFELPPPLFPPPP 84
Query: 207 APRAAPVLSPPP 172
PR P L PPP
Sbjct: 85 LPRLPPPLLPPP 96
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/58 (31%), Positives = 21/58 (36%)
Frame = -2
Query: 345 PYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPRAAPVLSPPP 172
P E+ + P PS PP P+ E P P A PV SPPP
Sbjct: 63 PPETPLSSPPPEPSPPSPSLTGPPPTTIPVSPPPEPSPPPPLPTEAPPPANPVSSPPP 120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,256,558
Number of Sequences: 28952
Number of extensions: 374585
Number of successful extensions: 1281
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -