Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0015
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    27   1.1  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   1.4  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   2.4  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   4.3  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.3  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   4.3  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   5.6  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    25   5.6  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.6  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   5.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.4  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   7.4  

>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -3

Query: 192 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 79
           EG     LSND L+   S +  P D     + ENAD+SFS  D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = -1

Query: 278 ASEEIDLELDLTSPIVIA-APMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMR 102
           A  E  L LD+TS ++      S+  +    ++    S+  FSR+ PPE+K+    L   
Sbjct: 115 AQTECSLALDMTSLLLSKFKENSIETISPFLKSTVPPSSLQFSRSQPPESKESDATLAKC 174

Query: 101 ISPSAEPTDAETLGTARTKLSRV 33
               +  +  + L  A+ +L+ V
Sbjct: 175 WKEKSLTSSCKFLFEAKERLTSV 197


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 219 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 100
           +  DN ++     SGS + D +  +  G+E+ +D  EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 189 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 85
           G GSG L ND L+ K S    P     +NA  S  G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = -3

Query: 201 VVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESG 34
           VV E D   +LS   LK  ++G      +AEN     S T    NSG S D V SG
Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +3

Query: 267  LFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVIN 389
            +  R++GP V  F+ K+P  L +   ++  + + V +LV+N
Sbjct: 972  IHNRKMGPTVKKFISKLP--LLNINVDLLPLTKNVLRLVLN 1010


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 312  KIPVYLTDYAAEVSRVLEYVAQL 380
            K+P +  DY  EV R+++  A L
Sbjct: 968  KVPTFYADYVNEVKRIIQRNANL 990


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 85  SAEGEIRIFSRVLRSFASGGLALENVVAEA--TASVSLADNIIVSDI-GAAITIGDVK 249
           S +GEI   + V  +  + G  L NVV EA   A     D +I SD+  AA  + D+K
Sbjct: 320 SKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLK 377


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +2

Query: 278 RSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSND 415
           + + SR   P  + C    L+++G  C+G     +H+    + SN+
Sbjct: 20  KPFRSRTPSPEREYCSDCPLQAKGSACNGNSHSLKHETNGASSSNN 65


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 222 SDVTDNDVVCEGDGSGSLSNDVLKGK-SSGSERPQDAAENADF 97
           SDV D +V+ E   +  +SN V + K  S  E   D A++  F
Sbjct: 404 SDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMF 446


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = -1

Query: 254 LDLTSPIVIAAPMSLTMMLSARETEAVA-SATTFSRASPPEAKDLRTRLKMRISPSAEP- 81
           L  + P+  +   SL+   S+ +    + S++TFS A+P             +S S+ P 
Sbjct: 164 LSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPS 223

Query: 80  -TDAETLGTARTKLSRVPT 27
            + + TL ++    S +P+
Sbjct: 224 SSSSSTLTSSSLSTSSIPS 242


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 236  LAMSNLTPNQSLRTRSWTS 292
            +   N TP  +LRTR W S
Sbjct: 965  IGFKNATPEYTLRTRIWAS 983


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,376
Number of Sequences: 5004
Number of extensions: 28083
Number of successful extensions: 111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)