Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0015
(461 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1110 + 30973202-30973870 30 0.79
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666... 30 1.0
05_03_0478 - 14526180-14526578 28 3.2
01_06_0034 + 25769436-25769701,25769749-25769887 28 4.2
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 27 5.6
12_01_0574 - 4697425-4698312 27 5.6
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 27 5.6
03_05_0892 + 28563151-28563669,28563977-28564035,28564170-285642... 27 7.3
09_02_0067 - 3812508-3813158,3813944-3814030,3814124-3814312,381... 27 9.7
06_03_1409 - 29966787-29966990,29967150-29967413,29968098-299682... 27 9.7
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 27 9.7
01_04_0149 - 16826019-16826023,16826065-16826635 27 9.7
>04_04_1110 + 30973202-30973870
Length = 222
Score = 30.3 bits (65), Expect = 0.79
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -1
Query: 254 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP 81
L + + + +P S T+ S+R+T A A ++A P + L L M +A+P
Sbjct: 97 LPKAAALAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154
>12_02_0542 -
20166044-20166111,20166399-20166526,20166613-20166686,
20166934-20166995,20167903-20168098,20168106-20169086
Length = 502
Score = 29.9 bits (64), Expect = 1.0
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = -1
Query: 323 DRDLL*EVVDGWSNFASEEID----LELDLTSPIVIAAPMSLTMMLSARETEAVASATTF 156
+ D+ VDGW FA + LEL L +P+ P A +T A S T
Sbjct: 117 EADITLSRVDGWLRFAERHVKGSFILELPLVAPVAARTPRRGEARSQAADT-AATSVTDD 175
Query: 155 SRASPPEAKDLRTRLKMRISPSAEPTDAETLGTA 54
A+ P +++ +++ S AE T + TLG A
Sbjct: 176 GEAAAPADEEV-VVVELPRSTRAE-TMSLTLGYA 207
>05_03_0478 - 14526180-14526578
Length = 132
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +2
Query: 281 SWTSRQQLPREDPCLPDGLRS---RGQPCSGVRRPTRH 385
SW RQ+ ED DG R RGQ RRP RH
Sbjct: 54 SWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRH 91
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 219 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 109
+V +D +C+G+G G + G ++ RPQ A E
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = -3
Query: 219 DVTDNDVV---CEGDGSGSLSNDVLKGKSSGSER 127
++ +ND++ C G G+GS S DVL +SG E+
Sbjct: 73 ELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEK 106
>12_01_0574 - 4697425-4698312
Length = 295
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = +1
Query: 58 VPRVSASVGSAEGE------IRIFSRVLRSFASGGLALENVVAEATASVSLA 195
V + VG+AEGE +R+ +R R + S GLA+ +V A A+ +LA
Sbjct: 220 VAAAAGDVGAAEGELREAQRLRVAARRRRLWLSAGLAVLLLVVLAAAAAALA 271
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 204 DVVCEGDGSGSLSNDVLKGKSSGSERPQDAA 112
+V C G G G+++ D +G SG R DAA
Sbjct: 120 NVGCIGGGGGNITVDGFRGGGSGGGRGGDAA 150
>03_05_0892 +
28563151-28563669,28563977-28564035,28564170-28564295,
28564460-28564595,28564901-28565209
Length = 382
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 272 EEIDLELDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPE 135
+E LDL + P S ML +ETE++A S +P E
Sbjct: 273 KEAQKALDLMEQEELTLPPSQQKMLRVKETESLADHQKLSAGNPQE 318
>09_02_0067 -
3812508-3813158,3813944-3814030,3814124-3814312,
3814475-3814603,3814917-3815003,3815126-3815563
Length = 526
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 341 SRGQPCSGVRRPTRHQQITVNYSND-TCESKINY 439
S G PC +R P+ H TVN D E K+ Y
Sbjct: 150 SNGYPCPPMRNPSDHFLRTVNKDFDKESEEKLQY 183
>06_03_1409 -
29966787-29966990,29967150-29967413,29968098-29968241,
29969000-29969329
Length = 313
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +1
Query: 64 RVSASVGSAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDIGAAITIGD 243
R+ +V + EG RI + + GG++ + A A + + + VS + + GD
Sbjct: 60 RLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGGD 119
Query: 244 VKS 252
+ S
Sbjct: 120 IVS 122
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 26.6 bits (56), Expect = 9.7
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Frame = -1
Query: 305 EVVD--GWSNFASEEIDLELDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEA 132
EV D GW A L + +P V+AAP T ++ S R PP
Sbjct: 34 EVADHYGWGFLACPTASLPFSIAAPPVVAAP---TAGPTSSAPVTFRSRRADCRLDPPAL 90
Query: 131 KDL-RTRLKMRISPSAEPTDAETLG--TARTKLSRVP 30
+ L +LK+ + P A+ G L+R+P
Sbjct: 91 RPLGHVKLKLTLESFPLPPSAQPPGKNNLLADLARLP 127
>01_04_0149 - 16826019-16826023,16826065-16826635
Length = 191
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 174 SLSNDVLKGKSSGSERPQDAAENADFSFS 88
+LS + +KGK +G+E QD + +F FS
Sbjct: 89 TLSEEGIKGKLNGAEITQDEYASDEFHFS 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,971,429
Number of Sequences: 37544
Number of extensions: 200009
Number of successful extensions: 763
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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