Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0015
(461 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 32 0.20
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_38556| Best HMM Match : RVP (HMM E-Value=1.4) 29 1.4
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 29 1.4
SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4) 29 1.4
SB_22574| Best HMM Match : RVP (HMM E-Value=1.4) 29 1.4
SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 29 1.4
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5) 28 4.3
SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32) 27 5.7
SB_56925| Best HMM Match : RVP (HMM E-Value=2.3) 27 7.6
SB_44556| Best HMM Match : RVP (HMM E-Value=2.3) 27 7.6
SB_7574| Best HMM Match : RVP (HMM E-Value=2.3) 27 7.6
SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18) 27 7.6
SB_7200| Best HMM Match : Tubulin-binding (HMM E-Value=5.1) 27 7.6
SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29) 27 10.0
SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_33949| Best HMM Match : TFIIB (HMM E-Value=0.0018) 27 10.0
SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_16815| Best HMM Match : TIL (HMM E-Value=0.39) 27 10.0
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 32.3 bits (70), Expect = 0.20
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -3
Query: 219 DVTDNDVVCEGDGSGSLS-NDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*V 43
DV+D D V +GD G+ + +DV G S G + +++ D S +G + N N D V
Sbjct: 166 DVSDGDDVSDGDVDGANNCDDVSNGASDGDDVSNGSSDGDDVS-NGANDVSNGANDGDDV 224
Query: 42 ESGADVAD 19
+ A+ D
Sbjct: 225 SNVANDGD 232
>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1505
Score = 29.5 bits (63), Expect = 1.4
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +1
Query: 34 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 192
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 331 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 390
Query: 193 AD--NIIVSDIGAAITIGD 243
+ +I V I +GD
Sbjct: 391 MEKNDIAVRPAKGQIILGD 409
>SB_38556| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 230
Score = 29.5 bits (63), Expect = 1.4
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +1
Query: 34 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 192
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 87 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 146
Query: 193 AD--NIIVSDIGAAITIGD 243
+ +I V I +GD
Sbjct: 147 MEKNDIAVRPAKGQIILGD 165
>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 1283
Score = 29.5 bits (63), Expect = 1.4
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +1
Query: 34 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 192
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 343 TRLGCNITTSSQSVSQADGSSQLHVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 402
Query: 193 AD--NIIVSDIGAAITIGD 243
+ +I V I +GD
Sbjct: 403 MEKNDIAVRPAKGQIILGD 421
>SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 29.5 bits (63), Expect = 1.4
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +1
Query: 34 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 192
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 8 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 67
Query: 193 --ADNIIVSDIGAAITIGD 243
++I V I +GD
Sbjct: 68 METNDIAVRPAKGQIILGD 86
>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1586
Score = 29.5 bits (63), Expect = 1.4
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +1
Query: 34 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 192
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 389 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 448
Query: 193 AD--NIIVSDIGAAITIGD 243
+ +I V I +GD
Sbjct: 449 MEKNDIAVRPAKGQIILGD 467
>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 577
Score = 29.5 bits (63), Expect = 1.4
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +1
Query: 34 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 192
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 342 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 401
Query: 193 AD--NIIVSDIGAAITIGD 243
+ +I V I +GD
Sbjct: 402 MEKNDIAVRPAKGQIILGD 420
>SB_22574| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 382
Score = 29.5 bits (63), Expect = 1.4
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +1
Query: 34 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 192
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 239 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 298
Query: 193 AD--NIIVSDIGAAITIGD 243
+ +I V I +GD
Sbjct: 299 MEKNDIAVRPAKGQIILGD 317
>SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1212
Score = 29.5 bits (63), Expect = 1.4
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +1
Query: 34 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 192
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 352 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 411
Query: 193 AD--NIIVSDIGAAITIGD 243
+ +I V I +GD
Sbjct: 412 MEKNDIAVRPAKGQIILGD 430
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 243 IANSYCSSDVTDNDV-VCEGDGSGSLSNDVLKGKSSGSERPQDAA 112
+ +S+ + TD D + +G+GSGS N + G +GS +++A
Sbjct: 695 LVDSHTPKEFTDTDAKLLQGEGSGSQHNVMRGGSGAGSGNLKESA 739
>SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5)
Length = 207
Score = 27.9 bits (59), Expect = 4.3
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 43 NLVLAVPRVSASVG-SAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDI 219
N+ + R +AS G + EIR+ + + GGLAL + AT L ++VS +
Sbjct: 12 NISASRNRHTASFGHGGDKEIRVQYAEIVAAVLGGLALAWIADLATGRRGLGATVLVSGV 71
Query: 220 GAA 228
G A
Sbjct: 72 GLA 74
>SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32)
Length = 1077
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 157 NVVAEATASVSLADNIIVSDIGAAITIGDVKSNSKSISSDA 279
NV+A+ S V D+G+A+ G K++ K++S+ A
Sbjct: 830 NVIAQGVKQTSKVIESGVDDVGSAVANGASKASRKTVSNVA 870
>SB_56925| Best HMM Match : RVP (HMM E-Value=2.3)
Length = 226
Score = 27.1 bits (57), Expect = 7.6
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 34 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATA 180
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 160 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLA 215
>SB_44556| Best HMM Match : RVP (HMM E-Value=2.3)
Length = 305
Score = 27.1 bits (57), Expect = 7.6
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 34 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATA 180
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 239 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLA 294
>SB_7574| Best HMM Match : RVP (HMM E-Value=2.3)
Length = 253
Score = 27.1 bits (57), Expect = 7.6
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 34 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATA 180
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 187 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLA 242
>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
Length = 563
Score = 27.1 bits (57), Expect = 7.6
Identities = 17/72 (23%), Positives = 32/72 (44%)
Frame = -1
Query: 263 DLELDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAE 84
DL+L +SP++ + + ++S + + T FSR S P + L I P+
Sbjct: 483 DLKLSSSSPLMNQTSVISSSIISPMGHNGIHTPTAFSRPSMPGIPGIHPGLYGPIIPAPT 542
Query: 83 PTDAETLGTART 48
+ T ++ T
Sbjct: 543 SSAGSTYNSSST 554
>SB_7200| Best HMM Match : Tubulin-binding (HMM E-Value=5.1)
Length = 294
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 272 RTRSWTSRQQLPREDPCLPDGLRSRGQPCSGV 367
RT+SWT + +++P +P L C GV
Sbjct: 223 RTKSWTFKSSQAKDNPRVPGHLDQTKGNCGGV 254
>SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29)
Length = 770
Score = 26.6 bits (56), Expect = 10.0
Identities = 25/108 (23%), Positives = 43/108 (39%)
Frame = -1
Query: 383 DELGDVLQNTADLGCVVRQVDRDLL*EVVDGWSNFASEEIDLELDLTSPIVIAAPMSLTM 204
D+ G ++ N A G + + D D W+ A+ I +SP + +P S
Sbjct: 309 DDFGGMMDNKAPYGLSYNEDEFDRF-TPKDPWAGLANTSIR-----SSPPLTGSPPSSRH 362
Query: 203 MLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLG 60
+ + SR PP L T ++ + P+ + A+TLG
Sbjct: 363 PHYGGSPPSSRNQQYGSRRPPPRPIQLNTDGEISLRPARDSIAAKTLG 410
>SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 688
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 323 LPDGLRSRGQPCSG--VRRPTRHQQITVNYSNDT 418
+PD L +GQPC G P Q+TV+Y T
Sbjct: 342 VPDKLYIKGQPCLGKITSLPNTVGQLTVHYYTGT 375
>SB_33949| Best HMM Match : TFIIB (HMM E-Value=0.0018)
Length = 720
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +1
Query: 58 VPRVSASVGSAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDIGAAITI 237
V V AS+ + G + + + A GG A+ + A A + ++ D+GA + +
Sbjct: 528 VATVLASMAAKGGHVEVLKVMDEYCADGGEAMTEAMGAAAAEGQVGVVELLIDLGADVDV 587
Query: 238 G 240
G
Sbjct: 588 G 588
>SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 26.6 bits (56), Expect = 10.0
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = -1
Query: 302 VVDGWSNFASEEIDLELDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRA-SPPEAKD 126
+VDG + S E+ +T+P AA + T + E A A ATT + A + +
Sbjct: 270 LVDGPCSTNSTELPATHTVTTPSPPAAIRATTTTATTTEAAATAEATTTATATTTATTTE 329
Query: 125 LRTRLKMRISPSAEPTDAETLGTARTKLS 39
+ + +A T A TA T S
Sbjct: 330 AAATAEATTTATATTTTAAITTTAATTTS 358
>SB_16815| Best HMM Match : TIL (HMM E-Value=0.39)
Length = 225
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 296 DGWSNFASEEIDLELDLTSPIVIAAPMS--LTMMLSARETEAVASATTFSRA 147
D W A+ ++ + SP A PMS ++ S+ +T V+S+ T S A
Sbjct: 90 DDWKEIAAPPNEITVTTPSPSSTATPMSSVTSIQSSSAKTTQVSSSVTTSDA 141
>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 338 RSRGQPCSGVRRPTRHQQIT--VNYSNDTCESKINYVLL 448
++R Q SGVR+ TRH +T + NDT + I +LL
Sbjct: 416 QARSQEGSGVRKKTRHSTVTSALIKENDTHTTFIFIMLL 454
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,502,917
Number of Sequences: 59808
Number of extensions: 228463
Number of successful extensions: 832
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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