Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0014
         (763 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7R9H7 Cluster: Serine/threonine-protein kinase; n=3; P...    35   1.9  
UniRef50_Q64S15 Cluster: Sigma factor SigB regulation protein Rs...    33   7.7  

>UniRef50_Q7R9H7 Cluster: Serine/threonine-protein kinase; n=3;
           Plasmodium (Vinckeia)|Rep: Serine/threonine-protein
           kinase - Plasmodium yoelii yoelii
          Length = 996

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -2

Query: 243 LKYNKYINTLSIYSLHTMLQYDKHFLLSSIINDEQ*NLDLATPAKMPSYITMLLKSNVLF 64
           +K +KY N   I  ++ +   DK  +L  + N EQ  +       +   + +L K+N L+
Sbjct: 784 IKSSKYYNNFLINRVNKIYNLDKTMILKELKNKEQNCIKTTYYLLLNKMVKILSKTNYLY 843

Query: 63  CHFVF 49
            H++F
Sbjct: 844 SHYIF 848


>UniRef50_Q64S15 Cluster: Sigma factor SigB regulation protein RsbU;
           n=2; Bacteroides fragilis|Rep: Sigma factor SigB
           regulation protein RsbU - Bacteroides fragilis
          Length = 389

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 164 SKKCLSYCN-IVCKEYIDKVLIYLLYFKYLFNTGVRTF 274
           S +CL+Y N ++CKE +D + + + Y  Y + TG+  +
Sbjct: 234 SAECLTYANKLLCKESLDSMFVTVFYGIYHYKTGMMDY 271


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,955,703
Number of Sequences: 1657284
Number of extensions: 12227122
Number of successful extensions: 25661
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25644
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)