Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0014
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0032 - 6227556-6227926,6228322-6231085                           29   3.1  
02_02_0034 - 6246183-6246553,6246672-6249699                           29   4.0  
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495     28   9.3  
05_05_0065 - 22069798-22069890,22070878-22071160,22071240-220713...    28   9.3  
01_01_0590 + 4396958-4397155,4397246-4397335,4397445-4397583,439...    28   9.3  

>02_02_0032 - 6227556-6227926,6228322-6231085
          Length = 1044

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -2

Query: 492 KNIDNIQLYRNKFITYSRTKILYFLILLVKLNVTYNYCVRWRPSDGVYGNITSKI 328
           K+I  + L RN  ++    + L  L  L KLN+++N      PS+GV+GN +  I
Sbjct: 683 KSIKELDLSRNS-LSGKVPEFLTLLSSLQKLNLSFNDFEGAIPSNGVFGNASRVI 736


>02_02_0034 - 6246183-6246553,6246672-6249699
          Length = 1132

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -2

Query: 492 KNIDNIQLYRNKFITYSRTKILYFLILLVKLNVTYNYCVRWRPSDGVYGNITSKI 328
           K+I  + L RN+ ++    + L     L KLN+++N      PS+GV+GN +  I
Sbjct: 683 KSIKELDLSRNR-LSGKVPEFLTLFSSLQKLNLSFNDFEGTIPSNGVFGNASRVI 736


>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
          Length = 1086

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 489 NIDNIQLYRNKFITYSRTKILYFLILLVKLNVTYNYCVRWRPSDGVYGNIT 337
           ++  + L+ N  I+ +  K L    +L+ LN+++N      P  GV+ NIT
Sbjct: 661 SLQTLDLFHNN-ISGTIPKYLANFTILISLNLSFNNLHGQIPKGGVFSNIT 710


>05_05_0065 -
           22069798-22069890,22070878-22071160,22071240-22071335,
           22071456-22071558,22071633-22071693,22071816-22071887,
           22072315-22072383,22072459-22072482,22073278-22073316,
           22073862-22073951,22074063-22074095
          Length = 320

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 551 HRCYSLI-VRFYTLIILFNIVKILITFNYIVTSLLLIREQKYY 426
           H  ++L+ VR Y        VK+L  F  IV SLL+I  +K+Y
Sbjct: 146 HMIFTLVFVRTYHKYGSKRFVKLLAWFMAIVQSLLIIASRKHY 188


>01_01_0590 +
           4396958-4397155,4397246-4397335,4397445-4397583,
           4398125-4398243,4398492-4398559,4399409-4399457,
           4399713-4400732
          Length = 560

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = -2

Query: 246 YLKYNKYINTLSIYSLHTMLQY-DKHFLLSSIINDEQ*NL-DLATPAKMPSYITMLLKSN 73
           Y ++   I+ L  +     LQ+ +KHFLLSSI +  Q +  D++T   + +Y T L +++
Sbjct: 210 YNRHGTEIHCLKEHGKSLKLQFLEKHFLLSSINSFGQLHYQDISTGEMVANYRTGLGRTD 269

Query: 72  VL 67
           V+
Sbjct: 270 VM 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,586,401
Number of Sequences: 37544
Number of extensions: 295882
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)