Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0014
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.58 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.1  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   7.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.1  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 12/57 (21%), Positives = 26/57 (45%)
 Frame = -2

Query: 489 NIDNIQLYRNKFITYSRTKILYFLILLVKLNVTYNYCVRWRPSDGVYGNITSKISFF 319
           ++ +  ++R   + Y+     Y + L+ K  V Y+  V W+P      + +  + FF
Sbjct: 104 HVPSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFF 160


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 52  NEVTEK-DIRF*QHCNVRRHLGWCC 123
           +E+ E  D +F Q C  RRH   CC
Sbjct: 332 DEIRESLDTQFLQVCRSRRHSDSCC 356


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 261 PVLNKYLKYNKYINTLSIYSLHTMLQYDKHFLLSSIIN 148
           P+L KYL +   + TLSI+   T+   + HF   S  N
Sbjct: 310 PLLGKYLLFTMILVTLSIWI--TVCVLNVHFRSPSTHN 345


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 209 IDKVLIYLLYFKYLFNTGV 265
           +DK++ Y  +F+ + N GV
Sbjct: 455 VDKLITYFDHFESMLNNGV 473


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 338 HLKSHFLNNM*HSNTIGVSSNKKCVL 261
           HL+  F N + H NT+ V   KK V+
Sbjct: 258 HLELTFENILSHINTVYVLRTKKGVM 283


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 209 IDKVLIYLLYFKYLFNTGV 265
           +DK++ Y  +F+ + N GV
Sbjct: 455 VDKLITYFDHFESMLNNGV 473


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 209 IDKVLIYLLYFKYLFNTGV 265
           +DK++ Y  +F+ + N GV
Sbjct: 81  VDKLITYFDHFESMLNNGV 99


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 338 HLKSHFLNNM*HSNTIGVSSNKKCVL 261
           HL+  F N + H NT+ V   KK V+
Sbjct: 258 HLELTFENILSHINTVYVLRTKKGVM 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,063
Number of Sequences: 438
Number of extensions: 4159
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)