Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0014
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR...    29   2.6  
At1g51130.1 68414.m05748 expressed protein similar to unknown pr...    28   7.8  

>At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1304

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
 Frame = -2

Query: 219 TLSIYSLHTM-LQYDKHFL----LSSIINDEQ*NL-DLATPAKMPSYITMLLKSNVLFCH 58
           TL + SL  M L Y K+F     LS  IN E+ NL +  +   +PS I   +K   L+C 
Sbjct: 609 TLPLGSLKKMNLWYSKYFKEIPDLSLAINLEELNLSECESLVTLPSSIQNAIKLRTLYCS 668

Query: 57  FVFRIDRK 34
            V  ID K
Sbjct: 669 GVLLIDLK 676


>At1g51130.1 68414.m05748 expressed protein similar to unknown
           protein GI:9294403 from [Arabidopsis thaliana]
          Length = 403

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 123 ATPAKMPSYITMLLKSNVLFCHFVFRIDRKEGKI 22
           A P   P    +++   V++ HFVFR+D K+ K+
Sbjct: 288 AMPRNAPD-ANVVMSGEVIYNHFVFRLDFKDWKL 320


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,262,449
Number of Sequences: 28952
Number of extensions: 268080
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)