Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0012
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    28   0.083
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   1.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   1.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.5  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   7.2  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   7.2  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 0.083
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 202 PVQWASVCRTSAWRTQRRPSSLSPTAIQL*RCALREH 312
           P  W S+ R+S+      P + +PT   + RCALR+H
Sbjct: 82  PFAWGSLXRSSS------PQTSAPTGPPIVRCALRKH 112


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +2

Query: 497 AQYKRTAATSPSGVAC*RLAAT---PPRTKLSRKTPMFSPATPPSVRANASCQLSSPKSY 667
           A  K   +TS +GVA  +  +T   PPR+     TP  S AT  S   +     +SP   
Sbjct: 97  ASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGK 156

Query: 668 LMASTT 685
              STT
Sbjct: 157 PATSTT 162


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 509 RTAATSPSGVAC*RLAATPPRTKLSRKTPMFSPATP 616
           R+ AT P+G+     +A+PP   + +++P      P
Sbjct: 216 RSVAT-PTGIPTPSTSASPPTVNIKKESPQMQSYRP 250


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/40 (25%), Positives = 15/40 (37%)
 Frame = +1

Query: 397 HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRPVQEDG 516
           HH  H  +Q      + G  MH  G    +P ++     G
Sbjct: 178 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQG 217


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/40 (25%), Positives = 15/40 (37%)
 Frame = +1

Query: 397 HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRPVQEDG 516
           HH  H  +Q      + G  MH  G    +P ++     G
Sbjct: 180 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQG 219


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 552 WPQHPLVP 575
           WPQH L+P
Sbjct: 582 WPQHMLIP 589


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 551 IFSTQRHLAKWQPSSCTGR 495
           I ++  HLAK   SS +GR
Sbjct: 72  IIASNHHLAKSDTSSASGR 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,951
Number of Sequences: 336
Number of extensions: 4202
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)