Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0012
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    29   0.64 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    28   1.5  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    28   1.5  
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    27   3.4  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   3.4  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    26   4.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.9  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   7.9  

>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 488 QRCAQYKRTAATSPSGVAC*RLAATPPRTKLSRKTPMFSPATPPSVRANASCQLSSP 658
           +R A   +  A S  GV   +L A  P TKLS   P      P + +A A+ +   P
Sbjct: 352 ERSAAISKEQAESGEGVEQIQLCAVDPNTKLSITIPEAGSTDPETQKARAAFESFPP 408


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 114 PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEET 257
           P PE ++E  K+A++   P K   +A ES     K  +++   +  ET
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENLKESHVNET 524


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 410 IKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKRTAATSPSGVA 541
           I ++KG++P + SE+E T     D+++        ++T P+ +A
Sbjct: 24  IDLEKGLLPEYNSEEEGTLPLYSDISKLANPVPEDSSTGPTEIA 67


>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 410 IKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKRTAATSPSGVA 541
           I ++KG++P + SE+E       D+++        ++T P+ +A
Sbjct: 24  IDLEKGLLPEYNSEEEGALPPYSDISKLANPVPEDSSTGPTEIA 67


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 600 NIGVFLDSLVRGGVAANLQHAT 535
           NI +FL SL  GGVA NL  A+
Sbjct: 861 NITIFLVSLKAGGVALNLTEAS 882


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 431 VPLFGSEDECTTQGLDDLAQRCAQYKRTAATSPSGV 538
           + LFGS++E   +     A+R A+Y +  A  P  V
Sbjct: 91  IDLFGSDEEEDPEAERIKAERVAEYNKKKAAKPKAV 126


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 654 LDNWHDALALTDGGVAGENIGVFLDSLVRGGV 559
           L NW +   L + G+   N+G F  S+VRG +
Sbjct: 585 LGNWTNIEYLPNSGINPSNVGTF--SMVRGAI 614


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +2

Query: 383 LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 490
           L+K+G++P   V++       +ED+ +T+G++ L +
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,000
Number of Sequences: 5004
Number of extensions: 64608
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)