Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0012
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.39 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.4  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 454 RMHHPGSGRPRPALRPVQEDGCHFAKWR 537
           + HHP   RPR    P   D  H+ +++
Sbjct: 153 KRHHPRYKRPRTTFEPRATDSRHYDRYK 180


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = -3

Query: 555 ANLQHATPLGEVAAVLLYWAQRWARSSRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSS 382
           A+L+ +     VAA  + +AQ+    S        S  ++ T+P +     M P+ S+
Sbjct: 37  ASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMYPYVSA 94


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 502 LGAALGEVVQTLGGAFVFRS 443
           +   LG +V   GG F+FR+
Sbjct: 289 INGILGSLVAITGGCFLFRA 308


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +1

Query: 373  GLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRP 501
            G   G+ G    H G +G      +G   + P SG P P   P
Sbjct: 1821 GSQYGQYGAPYDHYGSRGSVGRRSVGSARNIPVSGSPEPPPPP 1863


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 552 WPQHPLVP 575
           WPQH L+P
Sbjct: 583 WPQHMLIP 590


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 462  PPRVWTTSPSAAPSTRGR 515
            P RV T   S +PS RGR
Sbjct: 1369 PERVPTVDLSPSPSDRGR 1386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,583
Number of Sequences: 438
Number of extensions: 4946
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)