Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0006
(657 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 31 0.83
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 31 0.83
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8) 29 2.5
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8) 29 4.4
SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06) 28 5.8
>SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/65 (46%), Positives = 42/65 (64%)
Frame = +2
Query: 56 EAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKK 235
E +FDEYDYYNFD +++ G+ K R+K+EA +TN F P GH RK++ K N E N+
Sbjct: 2 EPYFDEYDYYNFD--RNVVEGNTRKGRSKREACLNTNRFCPGGHERKVLEKYRNTEKNRA 59
Query: 236 TSNTK 250
+K
Sbjct: 60 AKPSK 64
>SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 37.5 bits (83), Expect = 0.010
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 68 DEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS-RKIVTKLMNAEHNKKTSN 244
D+YD Y+FD H G K ++KKEAS++ N GHS RK + + E +K
Sbjct: 5 DKYDDYDFDERLH--EGGARKGKSKKEASQNKN-VSTQGHSERKAAEYIQHGEDKRKEEK 61
Query: 245 TK 250
K
Sbjct: 62 IK 63
>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = +2
Query: 83 YNFDHDKHIFT-GHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 253
Y DHD + GH T + EH + GH T EH+ TS +H
Sbjct: 327 YGHDHDTNTLRYGHDHDTNTLRYEQEHDTNTSRYGHDHDTNTLRYGHEHDTNTSRYEH 384
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 31.1 bits (67), Expect = 0.83
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -1
Query: 297 VLLLAIVVY*SAIHQCLVFEVFLLCSAFMSFVTIFLECPDGSKWLVCSDASFLVRCLP 124
V++L I V+ I VF + +L + L C S L CS +SFL+ C P
Sbjct: 1174 VIILFITVFSVIILFITVFSIIILLLPCSPSSSFSLPCSPSSFLLPCSPSSFLLPCSP 1231
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = +2
Query: 83 YNFDHDKHIFT-GHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 253
Y DHD + GH T + EH + GH T EH+ TS +H
Sbjct: 383 YGHDHDTNTLRYGHDHDTNTLRYEQEHDTNTSRYGHDHDTNTLRYGHEHDTNTSRYEH 440
>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
Length = 586
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 176 PSGHSRKIVTKLMNAEHNKKTSNTKH*WIADQ*TTMASRRTIELPNERRTLLR--IPEE 346
P S+ KL E NK K +D + ASR+T+++P + LLR +P+E
Sbjct: 318 PKTPSKNTKDKLSQKEANKLREEIK----SDSFNSSASRKTLDIPKKETVLLRRSVPDE 372
>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1360
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 128 KQRTKKEA--SEHTNHFDPSGHSRKIVTKLMNAEHNKKTSN 244
K R K+A S++ H++ H R +V+KL+ HN +N
Sbjct: 490 KDRMHKKAIKSKNQQHWEAFKHQRNLVSKLIKDSHNDYLNN 530
>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 44 VNMSEAFFDEYDYYNFDHDKHI 109
V+ +AF+ +DYY F HD ++
Sbjct: 508 VSEGKAFYGSFDYYQFPHDSNL 529
>SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8)
Length = 420
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 44 VNMSEAFFDEYDYYNFDHDKHI 109
V+ +AF+ +DYY F HD ++
Sbjct: 66 VSEGKAFYGSFDYYQFPHDSNL 87
>SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +2
Query: 47 NMSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEH 226
+++E F + Y+ Y +D T G+ E + ++ + P SRK TK+ +
Sbjct: 294 DIAEDFRERYEAYGYDQHDFPDTSSSGE-----ETLDDSDEWLPGQQSRKTSTKVASGAK 348
Query: 227 NKKTSNTK 250
+KT K
Sbjct: 349 KRKTDRGK 356
>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
Length = 512
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 281 MASRRTIELPNERRTLLRIPEEC 349
+ S RT +PN RTLL+IP C
Sbjct: 461 LVSNRTDLIPNINRTLLKIPNYC 483
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,817,586
Number of Sequences: 59808
Number of extensions: 413180
Number of successful extensions: 971
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -