Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0006
(657 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-2140|AAF53151.1| 69|Drosophila melanogaster CG6770-PA... 118 5e-27
AY058433-1|AAL13662.1| 1329|Drosophila melanogaster GH21134p pro... 29 4.2
AF188475-1|AAF37818.1| 1329|Drosophila melanogaster PDZ domain p... 29 4.2
AF188474-1|AAF37817.1| 1329|Drosophila melanogaster PDZ domain p... 29 4.2
AF188473-1|AAF37816.1| 1329|Drosophila melanogaster PDZ domain p... 29 4.2
AE013599-3348|AAX52678.1| 1329|Drosophila melanogaster CG6741-PC... 29 4.2
AE013599-3347|AAF46809.2| 1329|Drosophila melanogaster CG6741-PB... 29 4.2
AE013599-3346|AAF46810.2| 1329|Drosophila melanogaster CG6741-PA... 29 4.2
X04228-2|CAA27809.1| 96|Drosophila melanogaster protein ( Dros... 28 9.7
X04227-2|CAA27806.1| 96|Drosophila melanogaster URF 2 protein. 28 9.7
>AE014134-2140|AAF53151.1| 69|Drosophila melanogaster CG6770-PA
protein.
Length = 69
Score = 118 bits (285), Expect = 5e-27
Identities = 49/62 (79%), Positives = 56/62 (90%)
Frame = +2
Query: 50 MSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 229
MSEA FDEY++YNFDHDKHIF+GH GKQR K+EA+EHTNHFDPSGHSRKI+TKLMN +N
Sbjct: 1 MSEAHFDEYEHYNFDHDKHIFSGHSGKQRNKREANEHTNHFDPSGHSRKILTKLMNTNNN 60
Query: 230 KK 235
K
Sbjct: 61 NK 62
>AY058433-1|AAL13662.1| 1329|Drosophila melanogaster GH21134p protein.
Length = 1329
Score = 29.5 bits (63), Expect = 4.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 403 SHKISTSPTHRGCDLERDNATNEPSSKSVYFGRNTVQCLISN 528
S S+SP HR D E D A + S VY R C+ S+
Sbjct: 998 SSSCSSSPNHRLLDNENDPANDTDSYTPVYANRAASVCVASS 1039
>AF188475-1|AAF37818.1| 1329|Drosophila melanogaster PDZ domain
protein Arc protein.
Length = 1329
Score = 29.5 bits (63), Expect = 4.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 403 SHKISTSPTHRGCDLERDNATNEPSSKSVYFGRNTVQCLISN 528
S S+SP HR D E D A + S VY R C+ S+
Sbjct: 998 SSSCSSSPNHRLLDNENDPANDTDSYTPVYANRAASVCVASS 1039
>AF188474-1|AAF37817.1| 1329|Drosophila melanogaster PDZ domain
protein Arc protein.
Length = 1329
Score = 29.5 bits (63), Expect = 4.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 403 SHKISTSPTHRGCDLERDNATNEPSSKSVYFGRNTVQCLISN 528
S S+SP HR D E D A + S VY R C+ S+
Sbjct: 998 SSSCSSSPNHRLLDNENDPANDTDSYTPVYANRAASVCVASS 1039
>AF188473-1|AAF37816.1| 1329|Drosophila melanogaster PDZ domain
protein Arc protein.
Length = 1329
Score = 29.5 bits (63), Expect = 4.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 403 SHKISTSPTHRGCDLERDNATNEPSSKSVYFGRNTVQCLISN 528
S S+SP HR D E D A + S VY R C+ S+
Sbjct: 998 SSSCSSSPNHRLLDNENDPANDTDSYTPVYANRAASVCVASS 1039
>AE013599-3348|AAX52678.1| 1329|Drosophila melanogaster CG6741-PC,
isoform C protein.
Length = 1329
Score = 29.5 bits (63), Expect = 4.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 403 SHKISTSPTHRGCDLERDNATNEPSSKSVYFGRNTVQCLISN 528
S S+SP HR D E D A + S VY R C+ S+
Sbjct: 998 SSSCSSSPNHRLLDNENDPANDTDSYTPVYANRAASVCVASS 1039
>AE013599-3347|AAF46809.2| 1329|Drosophila melanogaster CG6741-PB,
isoform B protein.
Length = 1329
Score = 29.5 bits (63), Expect = 4.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 403 SHKISTSPTHRGCDLERDNATNEPSSKSVYFGRNTVQCLISN 528
S S+SP HR D E D A + S VY R C+ S+
Sbjct: 998 SSSCSSSPNHRLLDNENDPANDTDSYTPVYANRAASVCVASS 1039
>AE013599-3346|AAF46810.2| 1329|Drosophila melanogaster CG6741-PA,
isoform A protein.
Length = 1329
Score = 29.5 bits (63), Expect = 4.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 403 SHKISTSPTHRGCDLERDNATNEPSSKSVYFGRNTVQCLISN 528
S S+SP HR D E D A + S VY R C+ S+
Sbjct: 998 SSSCSSSPNHRLLDNENDPANDTDSYTPVYANRAASVCVASS 1039
>X04228-2|CAA27809.1| 96|Drosophila melanogaster protein (
Drosophila mRNA forCc gene from dopa decarboxylase gene
cluster; mapping2.0 kb from the 5'end of Ddc gene. ).
Length = 96
Score = 28.3 bits (60), Expect = 9.7
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 296 TIELPNERRTL-LRIPEECSGGCSSQRSMEHP 388
+I P RRT R+P S GCS S +HP
Sbjct: 11 SIASPASRRTWSARVPTSSSHGCSGPSSSDHP 42
>X04227-2|CAA27806.1| 96|Drosophila melanogaster URF 2 protein.
Length = 96
Score = 28.3 bits (60), Expect = 9.7
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 296 TIELPNERRTL-LRIPEECSGGCSSQRSMEHP 388
+I P RRT R+P S GCS S +HP
Sbjct: 11 SIASPASRRTWSARVPTSSSHGCSGPSSSDHP 42
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,740,553
Number of Sequences: 53049
Number of extensions: 612754
Number of successful extensions: 1490
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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