Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0005
(804 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 52 1e-07
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 52 1e-07
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 46 5e-06
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 46 6e-06
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 41 2e-04
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 39 0.001
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 35 0.012
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 35 0.016
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 33 0.036
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 32 0.11
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 30 0.44
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 29 0.77
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 29 1.0
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 28 1.8
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 27 2.4
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 27 4.1
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 5.5
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 26 5.5
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 26 7.2
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 9.5
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 51.6 bits (118), Expect = 1e-07
Identities = 32/70 (45%), Positives = 38/70 (54%)
Frame = +3
Query: 516 QQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTCNGSVPHNTEPTWVHEIFQG 695
QQDAHEF NFL+N + E TL N + V H P WVH +F+G
Sbjct: 196 QQDAHEFFNFLLNSVTE---------TLDEYYGNHSD-------VMH---PKWVHSLFEG 236
Query: 696 TLTSETRCLT 725
TLTSET+CLT
Sbjct: 237 TLTSETKCLT 246
Score = 47.2 bits (107), Expect = 3e-06
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +1
Query: 235 VRAVPTYEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEY 360
+R + ++GL N+GNTCY +SVL +LY +PFR+ + Y
Sbjct: 31 IRPETLTDRFYGLTNYGNTCYVSSVLVSLYHLKPFRDSLNSY 72
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +1
Query: 382 KETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKEKEEFDIT 513
KE + TCL DL+ S++ + G +P++FI LR++ E F T
Sbjct: 151 KENIYTCLKDLYCSVSCCDCRYGICSPERFIQVLRRDNEAFRST 194
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 51.6 bits (118), Expect = 1e-07
Identities = 23/64 (35%), Positives = 39/64 (60%)
Frame = +1
Query: 262 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKK 441
Y GL N G TCY NS+LQ+L+F FR+ V + N +++++ L +FY++ Q++
Sbjct: 229 YVGLKNQGATCYMNSLLQSLFFTNIFRKTVYKIPTDNDDSRDSVAYALQRVFYNLEKQRE 288
Query: 442 KVGS 453
V +
Sbjct: 289 PVST 292
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 46.4 bits (105), Expect = 5e-06
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +1
Query: 262 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKK 441
Y GL N G TCY NS+LQ+LY FR V + + + K+++ L FY++ +
Sbjct: 212 YVGLKNQGATCYMNSLLQSLYIIHAFRRIVYQIPTDSPQGKDSIAYALQRCFYNLQFMNE 271
Query: 442 KVGS 453
V +
Sbjct: 272 PVST 275
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 46.0 bits (104), Expect = 6e-06
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Frame = +1
Query: 250 TYEHY--FGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKA--KNKRTKETLLT--CLAD 411
+YE+Y GL N GNTCY N VLQ L+ C+ +L+ + +N TK L T +
Sbjct: 65 SYENYQPIGLTNLGNTCYMNCVLQCLFACKDLTIPMLQGRGLLQNINTKNPLGTGGKITS 124
Query: 412 LFYSIATQ---KKKVGSIAPKKFIARLRKEKEEFDI 510
F+S+ SI+P+ F+ ++ +F I
Sbjct: 125 AFFSLLQSVLLNHGQRSISPRNFLEIVQSLNRDFSI 160
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 40.7 bits (91), Expect = 2e-04
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTC---LADLFYSI--AT 432
GL N GNTCY NS LQ L R R+ + KN+ + L +A +F S+ +
Sbjct: 312 GLSNLGNTCYMNSALQCLTHTRELRDFFTSDEWKNQVNESNPLGMGGQVASIFASLIKSL 371
Query: 433 QKKKVGSIAPKKFIARLRKEKEEF 504
+ S AP++F A + K F
Sbjct: 372 YSPEHSSFAPRQFKATIGKFNHSF 395
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 510 YMQQDAHEFLNFLINHINE 566
Y QQD+ EFL FL++ ++E
Sbjct: 398 YGQQDSQEFLAFLLDGLHE 416
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 38.7 bits (86), Expect = 0.001
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPF 339
G +N GN C+ NS+LQAL +C PF
Sbjct: 134 GFINTGNICFMNSILQALMYCVPF 157
Score = 31.9 bits (69), Expect = 0.11
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 516 QQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTCNGSV 650
Q+DA EFLN ++ ++E + ER LK + N ++ + +
Sbjct: 226 QEDAEEFLNLFLDELHEEFVRERRHYLLKNDERNPKSDIKISNGI 270
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 35.1 bits (77), Expect = 0.012
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 447
GL+N GNTCY NS +Q L + V ++ + E + ++ +
Sbjct: 101 GLINLGNTCYMNSTVQMLRAIPELSDAVSQFNSSGGLVAE---------YRTLLNSMQSN 151
Query: 448 GSIAPKKFIARLRKEKEEF 504
+ P +F+ LR E +F
Sbjct: 152 APVTPMRFLQSLRMEYPQF 170
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 34.7 bits (76), Expect = 0.016
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLE 357
GL N GN CY NS++Q + +P R +L+
Sbjct: 615 GLENTGNLCYLNSLIQYYFIIKPLRNAILD 644
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 33.5 bits (73), Expect = 0.036
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVL 354
GLVN GNTC+ NSVLQ + P + +L
Sbjct: 126 GLVNLGNTCFMNSVLQLMTQTPPLVQYLL 154
Score = 26.2 bits (55), Expect = 5.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 510 YMQQDAHEFLNFLIN 554
Y Q+DAHEF+ +L++
Sbjct: 210 YRQEDAHEFMRYLVD 224
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 31.9 bits (69), Expect = 0.11
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKN------KRTKETLLTCLADLFYSIA 429
GL N G TC+ NS LQ L C + + ++ + K TK + L+ +
Sbjct: 209 GLKNLGATCFFNSTLQVLCACEALHDVISPFQYSHSSVIVRKLTKSPESSLLSAFIKFLE 268
Query: 430 TQKKKVGSIA---PKKFIARLRKEKEEF 504
T K G+I+ P F R+ +F
Sbjct: 269 TFYKSDGTISVYRPTTFFGEFRRLHPQF 296
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 29.9 bits (64), Expect = 0.44
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQAL 321
GL N GN+CY NS LQ +
Sbjct: 280 GLYNLGNSCYMNSALQCM 297
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 29.1 bits (62), Expect = 0.77
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPF 339
GL N GN+CY S +Q+L+ + F
Sbjct: 301 GLKNLGNSCYLASTMQSLFSIKEF 324
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLE-YKAKNKRTKETLLTC-LADLFYSIATQKK 441
G+ N G TC+ + +LQ++ R + + T +TC + D+F SI K
Sbjct: 146 GIQNLGATCFMSVILQSILHNPLVRNLFFSGFHTSTDCKRPTCMTCAIDDMFSSIYNSKN 205
Query: 442 K 444
K
Sbjct: 206 K 206
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 159 DICNSVLTTYQTNTRFSPPNEGV*NFSTVISRNIIN 52
+I N VL+ Y+T PPN G + I+RN+I+
Sbjct: 590 NIQNHVLSCYKTLFFEPPPNSGTNEAANYIARNLIS 625
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 714 SSRLLMFLGIFRAPKSVQCCEALNHYTSHSHRSCSFE 604
+S +++F+ I + P + C E LN S +R SFE
Sbjct: 531 TSSIIIFISILKRPLASICSEDLNCLISVKNRLISFE 567
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 701 NKRDEVSHCETVSSKDEHFFD 763
N + VSH T SSKDE F D
Sbjct: 114 NSKPTVSHSYTNSSKDEKFLD 134
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 282 WQHLLQQLSVASFIFLSPIQRESIRVQS*E*KDQGNSINMPGRFIL*HSYSKEKSWINC 458
W++ L QLS+ S I LSP IR + +S+ ++ ++ EKS +NC
Sbjct: 358 WRNPLPQLSIISHIILSPTSMFDIREFNVNPVVSVDSLKDYSEELVNYAKIYEKSNLNC 416
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 291 SVAKID*SEIMFVGGNCSDPISLSNCDIFA 202
SV ID MF+GG S LS+C FA
Sbjct: 430 SVVSIDKKTCMFIGGRESPKKILSSCIYFA 459
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 10 VTVVLRFSVSKRNIINNVSRNNCREVL 90
+ V+ R+ +K I+ + +NN +EVL
Sbjct: 263 IKVITRYENAKGRIVEGIPKNNLKEVL 289
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 282 WQHLLQQLSVASFIFLSPIQ 341
W H+ QQ+ + SF L+P Q
Sbjct: 347 WDHITQQIGMFSFTGLTPAQ 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,288,330
Number of Sequences: 5004
Number of extensions: 68681
Number of successful extensions: 206
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -