Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0005
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.82 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 769 PVIKEMLIFTADRLTVRHLVSLVNVPWN 686
           P+I + L+FT    TV  LV+++ + WN
Sbjct: 294 PLIAKYLLFTFIMNTVSILVTVIIINWN 321


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 675 PKSVQCCEALNHYTSHSH 622
           PK+    +  NHYTSH H
Sbjct: 111 PKNQYKNQNNNHYTSHQH 128


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 340 REKVLEYKAKNKRTKET 390
           REK++E K KNK    T
Sbjct: 460 REKIIEEKRKNKNKNLT 476


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,781
Number of Sequences: 438
Number of extensions: 4719
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)