Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0004
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3...    29   2.2  
At2g42570.1 68415.m05268 expressed protein                             28   6.6  

>At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3)
           family protein contains Pfam profile: PF05879 root hair
           defective 3 GTP-binding protein    (RHD3) family
          Length = 834

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +2

Query: 41  PTNADSLARLFQLLLDV*VSSRAS-NRS-GANTDPSKCSASQNLPPD 175
           P N +S   LF  L+D  VS+ +S NRS G +TDP   S+ + +PP+
Sbjct: 598 PDNIEST--LFSSLMDGTVSAASSHNRSVGTSTDPLASSSWEEVPPN 642


>At2g42570.1 68415.m05268 expressed protein
          Length = 367

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 546 TKHTQVWSYLE*TSELYKEM 487
           T+H Q W Y+E  + LYK+M
Sbjct: 212 TEHIQPWDYMEDGNRLYKDM 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,540,272
Number of Sequences: 28952
Number of extensions: 235582
Number of successful extensions: 445
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)