Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0002
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    72   7e-14

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 30/64 (46%), Positives = 41/64 (64%)
 Frame = +1

Query: 496 IRILFTILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRHLNNHFS 675
           +  LF   QAYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+        H +
Sbjct: 181 LSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLT 240

Query: 676 KNHH 687
             HH
Sbjct: 241 NTHH 244



 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
 Frame = +2

Query: 167 RDISREGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNIEIGRI*PP 346
           RD+S E    G HT  V KGL+ G                    H  LSP  E+G + PP
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPP 128

Query: 347 SRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENN 457
             I     +P ++PLLNT+IL+ SG ++T AH+SLI  N
Sbjct: 129 VGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARN 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,114,793
Number of Sequences: 5004
Number of extensions: 33699
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)