Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0001
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 157 8e-39
07_01_0756 + 5819367-5820038,5820847-5821005 154 6e-38
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 74 1e-13
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031 29 2.0
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.7
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 29 2.7
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 157 bits (380), Expect = 8e-39
Identities = 71/82 (86%), Positives = 77/82 (93%)
Frame = +1
Query: 10 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 189
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 81 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Query: 190 AKLSVLPVRRGYWGNKIGKPHT 255
AKLSV+PVRRGYWGNKIG+PHT
Sbjct: 141 AKLSVVPVRRGYWGNKIGQPHT 162
Score = 113 bits (273), Expect = 7e-26
Identities = 51/79 (64%), Positives = 60/79 (75%)
Frame = +3
Query: 255 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 434
VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLGNF
Sbjct: 163 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKA 222
Query: 435 XXXXXXXXXXXLTPDLWRD 491
LTPD WRD
Sbjct: 223 TFDCLMKTYGFLTPDFWRD 241
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 154 bits (373), Expect = 6e-38
Identities = 70/82 (85%), Positives = 76/82 (92%)
Frame = +1
Query: 10 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 189
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 84 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Query: 190 AKLSVLPVRRGYWGNKIGKPHT 255
AKLSV+PVRRGYWGNKIGKPHT
Sbjct: 144 AKLSVVPVRRGYWGNKIGKPHT 165
Score = 112 bits (269), Expect = 2e-25
Identities = 50/79 (63%), Positives = 60/79 (75%)
Frame = +3
Query: 255 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 434
VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLGNF
Sbjct: 166 VPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKA 225
Query: 435 XXXXXXXXXXXLTPDLWRD 491
LTPD WR+
Sbjct: 226 TFDCLMKTYGFLTPDFWRE 244
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/62 (54%), Positives = 45/62 (72%)
Frame = +3
Query: 240 RKATHVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 419
RK V CKV K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST TL
Sbjct: 46 RKPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLS 105
Query: 420 NF 425
NF
Sbjct: 106 NF 107
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +1
Query: 97 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 192
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +1
Query: 25 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 204
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 205 LPV 213
+ V
Sbjct: 231 VTV 233
>02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031
Length = 538
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 374 YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLA 261
Y ++++L+++W H+ R + PD G + DLA
Sbjct: 410 YPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLA 447
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 159 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 43
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -1
Query: 296 DCYGTTLAGDL--ARDVCGFPILLP 228
D GTT GD+ A DVCGFP+ P
Sbjct: 24 DGVGTTAEGDVFAACDVCGFPVCRP 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,783,467
Number of Sequences: 37544
Number of extensions: 416379
Number of successful extensions: 1040
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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