Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0001
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   145   2e-35
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC024781-2|AAK39328.2|  311|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z81584-8|CAE17906.1|   77|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    27   9.6  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    27   9.6  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  145 bits (352), Expect = 2e-35
 Identities = 67/79 (84%), Positives = 73/79 (92%)
 Frame = +1

Query: 19  SLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKL 198
           +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL
Sbjct: 97  NLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKL 156

Query: 199 SVLPVRRGYWGNKIGKPHT 255
           +V+PVRRGYWGNKIG PHT
Sbjct: 157 AVVPVRRGYWGNKIGLPHT 175



 Score =  122 bits (293), Expect = 2e-28
 Identities = 55/79 (69%), Positives = 61/79 (77%)
 Frame = +3

Query: 255 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 434
           VPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST TLGNF   
Sbjct: 176 VPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKA 235

Query: 435 XXXXXXXXXXXLTPDLWRD 491
                      LTPDLW++
Sbjct: 236 TYAALQRTYSYLTPDLWKE 254


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 276 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 407
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 276 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 407
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 368 SHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDL 264
           +H K + +N RR+    +R +N+   YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 102 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 16
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 102 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 16
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>AC024781-2|AAK39328.2|  311|Caenorhabditis elegans Hypothetical
           protein Y43H11AL.2 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +1

Query: 73  GQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPH 252
           G    F  F  +GD    +G  +  +++    I G   + +  VL  + GY+     +P 
Sbjct: 72  GLSLAFLFFWLVGDTCNMLG-AILTNQQPIQKIIGVYYIIQDLVLWTQYGYYLKIYNRPT 130

Query: 253 TSLARSPASVVP 288
           TS ARS   VVP
Sbjct: 131 TSSARSNTIVVP 142


>Z81584-8|CAE17906.1|   77|Caenorhabditis elegans Hypothetical
           protein T04C12.8 protein.
          Length = 77

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 328 IPVPRGAGISRTVTEPHLPVTLQGTCVAFLSC 233
           +P+P+GA   +++  P L   L    +AFL C
Sbjct: 32  VPMPKGASCPQSIFRPSLLFYLAPAVIAFLIC 63


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 51  CTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 179
           CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 58  CTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 51  CTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 179
           CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 58  CTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,588,152
Number of Sequences: 27780
Number of extensions: 328128
Number of successful extensions: 839
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)