Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32685
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   2.1  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   2.8  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   3.7  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    24   6.4  
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    24   6.4  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    24   6.4  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 246 YSLYTNIIILFHMLFTC*EID--ALMGHA 166
           +++Y N IILF M F C  ++  A  GH+
Sbjct: 453 WNVYLNFIILFSMCFVCAVVEGIAWRGHS 481


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 360 WVGLEYKAIGNTKDGLTWINNY-GYSL*FCYLFLNID*IYSLYTNII 223
           ++ + +  +    D + ++ NY G+S  FC++FLN+  I  + T II
Sbjct: 35  YISIIFLFLNYVVDIVCYVKNYNGFSF-FCWVFLNLGVIGIIITVII 80


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +3

Query: 60  YQSSTFTPQYYCIIF*ESKIEQGNSVRIKLKIVSSMRDPS 179
           ++  T  P++YC+     KIE  ++V +++ + +   +P+
Sbjct: 35  FKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQAMKEEPA 74


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 111 SKIEQGNSVRIKLKIVSSMRDPSRHR 188
           S  + G S ++ LK   ++R PS+HR
Sbjct: 49  SLTDTGESDQLSLKSFGAIRQPSQHR 74


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 96  YNNIVE*MLNFDIYVV 49
           Y  IV  +LNFDIYV+
Sbjct: 170 YEKIVLALLNFDIYVI 185


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 137 YRIPLFNFRFLKYNTIILWSKC*TLIFM 54
           Y++PLF    +K   +ILW    TLI M
Sbjct: 356 YQVPLFPTNNIKCPMLILWGGKDTLINM 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,423,243
Number of Sequences: 5004
Number of extensions: 25793
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)