Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32685
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0200 - 6672743-6673717,6676257-6676634,6677017-6677301,667...    29   1.5  
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76...    27   3.4  

>10_02_0200 -
           6672743-6673717,6676257-6676634,6677017-6677301,
           6677420-6677570,6677696-6677930,6678689-6678764
          Length = 699

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 9   FLLNKLNKQKTNAIRHKYQSSTFTPQYYCIIF*ESKIEQGNSVRIKL 149
           ++  K+N QK N  R +  S   +PQ+ C I    + +QG S  ++L
Sbjct: 288 YVAYKINAQKLNIYRIEPCSGLISPQFTCNISVRMQAQQGVSPNMQL 334


>09_01_0042 +
           764349-764763,764853-764902,765096-765172,766179-766236,
           767481-767607,768665-768769,768842-769424,769470-769775,
           770048-770139,770391-770440
          Length = 620

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 284 FDFVISF*ILIEYIHFIPILLYYSICY 204
           F FV+S  +++++++   ILL+ +ICY
Sbjct: 477 FCFVLSTSLMLQWLYSFQILLHVTICY 503


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,854,280
Number of Sequences: 37544
Number of extensions: 124308
Number of successful extensions: 185
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)