Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32685
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical pr...    28   2.4  
AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane...    28   2.4  
AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine re...    28   2.4  
AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical ...    27   4.1  
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AF022981-10|AAG24203.1|  360|Caenorhabditis elegans Serpentine r...    26   7.2  

>Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical
           protein C08B11.4 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 227 LLYYSICYLRAEKSMP*WVTH*GNDFQFYSYRIPLFNFRFLKY 99
           L+Y +   L+ ++    W  +  ND QF+ + +PL    FLK+
Sbjct: 519 LIYLNNFLLQDQECCMGWTWYLANDMQFHIFLMPLLVIVFLKW 561


>AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane
           protein NRF-6 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 227 LLYYSICYLRAEKSMP*WVTH*GNDFQFYSYRIPLFNFRFLKY 99
           L+Y +   L+ ++    W  +  ND QF+ + +PL    FLK+
Sbjct: 519 LIYLNNFLLQDQECCMGWTWYLANDMQFHIFLMPLLVIVFLKW 561


>AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein5 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -2

Query: 273 YLFLNID*IYSLYTNIIILFHMLF 202
           Y+FL+ID +YS Y+N I+L + +F
Sbjct: 161 YMFLSIDGVYS-YSNAILLVYNIF 183


>AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical
           protein F14D2.7 protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 234 YKVNIFNQYLKRDNKIKDCNH 296
           Y++N F QY++  N  +DC H
Sbjct: 338 YRLNAFAQYIESMNNEEDCGH 358


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 282 KDCNHNC*SKSNHPSC 329
           KDCNHNC +    P C
Sbjct: 113 KDCNHNCTNTEFDPVC 128


>AF022981-10|AAG24203.1|  360|Caenorhabditis elegans Serpentine
           receptor, class h protein82 protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 149 QFYSYRIPLFNFRF 108
           Q  SYR+PLFNF F
Sbjct: 57  QMGSYRLPLFNFHF 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,632,484
Number of Sequences: 27780
Number of extensions: 137409
Number of successful extensions: 293
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)