Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32683
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   8.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.2  

>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +3

Query: 60  YQSSTFTPQYYCIIF*ESKIEQGNSVRIKLKIVSSMRDPS 179
           ++  T  P++YC+     KIE  ++V +++ + +   +P+
Sbjct: 35  FKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQAMKEEPA 74


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 305  IQVKPSFVFPMALYSSPTHSSYPLLXKCSRTY 400
            + +KP ++F + L S  T  S+ L  +C R +
Sbjct: 1259 LYLKPQYLFSVQLASDFTEDSFTLTSECLRYF 1290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,411
Number of Sequences: 5004
Number of extensions: 46642
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)