Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32682
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336...    67   8e-12
12_01_0844 + 7915121-7915225,7915724-7915777,7915888-7915968,791...    30   1.1  
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834           29   3.5  
01_01_0043 - 321810-321973,322054-322846                               28   4.6  
12_02_0752 + 22784052-22784288,22784531-22784704,22784799-227849...    28   6.1  
01_01_0044 - 326337-326500,326618-327398                               28   6.1  
03_02_0499 - 8908323-8908423,8908822-8908972,8909761-8909867,890...    27   8.0  

>02_05_1223 +
           35033273-35033353,35033455-35033539,35033613-35033683,
           35034400-35034531,35034654-35034769,35035128-35035251,
           35035349-35035417,35035508-35035628,35035707-35035843
          Length = 311

 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 32/83 (38%), Positives = 55/83 (66%)
 Frame = +2

Query: 323 IGTQLILPYRGDFYDAQRLKVCGDLCQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 502
           +G+Q+++P+RG     + LK+ GDL Q++   Y+  D +SI   +  SNVVINL+GR+YE
Sbjct: 1   MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60

Query: 503 TKNFKYNDVHVDGVRRIARICTE 571
           T+N+ +++V+     ++A I  E
Sbjct: 61  TRNYGFDEVNHHMAEQLAMISKE 83


>12_01_0844 +
           7915121-7915225,7915724-7915777,7915888-7915968,
           7916164-7916209,7916311-7916405,7916581-7916613,
           7916941-7917286,7917372-7917511
          Length = 299

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 236 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDL 397
           GR+     VA V G +  +GR +   LGK G ++I+ Y     +A+  +VC ++
Sbjct: 3   GRAKLAAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAE--EVCREI 54


>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
          Length = 939

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 334 LGTNFSQFVAHIASDKSGATENCGYDAVKATAATSTSLICCKVGF 200
           + ++FS   A+  SDK    EN G   + ++ +  TS    KVGF
Sbjct: 548 ISSSFSNMTANDHSDKLNVKENVGNTIIHSSRSVDTSNAEHKVGF 592


>01_01_0043 - 321810-321973,322054-322846
          Length = 318

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = +2

Query: 230 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 397
           +GG  +       V G TG++GR+V     ++G   T L+      D   AQ L    D 
Sbjct: 3   SGGDQTTTKSRILVVGGTGYIGRHVVAASARLGHPTTALVRDLAPSDPAKAQLLHTFRD- 61

Query: 398 CQVLFTPYHLLDEESIAKAVRYSNVVINLV 487
             V      L D  S+ +AVR ++VVI+ V
Sbjct: 62  AGVTLLHGDLHDHASLLRAVRDADVVISAV 91


>12_02_0752 +
           22784052-22784288,22784531-22784704,22784799-22784930,
           22785062-22785439
          Length = 306

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +2

Query: 53  QLYKYELSQYLSHKMAAIALKTQATSKLLHLNGSMSVVYIKAANYSSDRKPNL 211
           Q  K +   YLSHK++ I L T    KL+ +  S+S V       + DR P+L
Sbjct: 112 QAPKMKTLGYLSHKISTIELGTMVFQKLVPV--SLSNVMCTVKILALDRAPDL 162


>01_01_0044 - 326337-326500,326618-327398
          Length = 314

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = +2

Query: 230 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 397
           +GG    + I+  V G TG++GR+V     ++G   T L+      D   +Q L+   D 
Sbjct: 3   SGGEEKKSRIL--VVGGTGYIGRHVVLASARLGHPTTALVRDLSPSDPAKSQLLQSFRD- 59

Query: 398 CQVLFTPYHLLDEESIAKAVRYSNVVINLVG 490
             V      L D  S+  AVR ++VVI+ +G
Sbjct: 60  AGVTLLHGDLYDHASLLSAVRDADVVISTLG 90


>03_02_0499 -
           8908323-8908423,8908822-8908972,8909761-8909867,
           8909954-8910170,8910941-8911148,8911261-8911358
          Length = 293

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 236 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK 382
           GR S +G +A V G T  +GR V  +L  +G  +    R +    +RLK
Sbjct: 14  GRWSLHGKMALVTGGTRGIGRAVVEELAALGAAVHTCSRNEAELGERLK 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,533,529
Number of Sequences: 37544
Number of extensions: 284360
Number of successful extensions: 595
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)