Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32672
(408 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 28 0.49
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 0.85
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 1.1
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 2.0
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 3.4
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 3.4
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 25 4.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 4.5
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 6.0
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 25 6.0
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb... 24 7.9
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 28.3 bits (60), Expect = 0.49
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +1
Query: 31 LHRFKLPDDIRELLRAKNASIRAYDRYPTAEN 126
L+RF P DIR L R N S R D P A N
Sbjct: 809 LNRFNRPPDIRRLKRLVNFSFRTQD--PEASN 838
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 0.85
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 249 SYSQIGYGSNYAPPRRPLKPTRG 317
SYSQ Y PP+ P P+RG
Sbjct: 96 SYSQPSYSQPSQPPKEPALPSRG 118
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 27.1 bits (57), Expect = 1.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 46 LPDDIRELLRAKNASIRAYDRY 111
LP D+R+++ N+ IR YD Y
Sbjct: 619 LPLDVRQIIGLANSIIRGYDNY 640
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 2.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 252 YSQIGYGSNYAPPRRPLKPTRG 317
YS+ GY PPR L P++G
Sbjct: 898 YSRGGYSRGSVPPRETLAPSKG 919
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 3.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 301 SSRLAAFDDDEKAELLAD 354
S +LA+FDDDE+A + D
Sbjct: 450 SEKLASFDDDEEARVSRD 467
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 25.4 bits (53), Expect = 3.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 52 DDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDAR 192
D+ + A+ RA+DR TAE R+ + + D ++ ++DA+
Sbjct: 342 DEFFSSIEAQKLKKRAHDRLATAER--RLESAKEDQARKLQSLQDAQ 386
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 84 RLDPCVR*VSYRGKSYSNACPTTRRKV 164
R+ PC+ V +RG S+ C T +++
Sbjct: 11 RMRPCISVVGFRGFHASSPCEATLKEI 37
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 283 PPLVGPSSRLAAFDDDEKAELLADTLQTQCTPSTQ 387
PP V +++L ++ K + L D LQ P+T+
Sbjct: 1944 PPSVASNAKLPPASNNRKVDPLEDILQAMPPPTTR 1978
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 24.6 bits (51), Expect = 6.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 20 RRTSFTASNCPTILGNSLELRTPRSVRT-IGILPRKIVFECVPYNAT*SL 166
+++SF S I E R + T IG P+K F VP+N + S+
Sbjct: 366 KKSSFNTSLGEFISNGIYEARKALGLLTPIGCSPKKFAFSEVPFNDSNSI 415
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 24.6 bits (51), Expect = 6.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 131 IRFSAVGYLSYARIEAFLALRSSLISSGNL 42
I F + G+L A + A LAL ++++G++
Sbjct: 387 IFFGSTGFLGNATVIAILALGGRMVAAGDI 416
>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 24.2 bits (50), Expect = 7.9
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 23 RTSFTASNCPTILGNSLELRTPRSVRTIGILPRKIVFECVPY 148
+TSF A NC +L + R S+ I+ + + P+
Sbjct: 119 KTSFVAKNCSVVLEDQKRYRIRASINMDSIIDITVHQDAPPF 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,990
Number of Sequences: 5004
Number of extensions: 27163
Number of successful extensions: 72
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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